PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009619961.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | WRKY | ||||||||
Protein Properties | Length: 532aa MW: 57475.3 Da PI: 7.4727 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 105.6 | 2.6e-33 | 240 | 296 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dDgynWrKYGqK+vkgse+prsYY+Ct+++Cpv+kkvers d++v+ei+Y+g+Hnh+ XP_009619961.1 240 DDGYNWRKYGQKHVKGSEYPRSYYKCTHPNCPVRKKVERSL-DGQVTEIIYKGQHNHH 296 8****************************************.***************7 PP | |||||||
2 | WRKY | 106.6 | 1.3e-33 | 419 | 477 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Cts+gC+v+k+ver+ +dpk+v++tYeg+Hnh+ XP_009619961.1 419 LDDGYRWRKYGQKVVKGNPYPRSYYKCTSQGCNVRKHVERAPSDPKAVITTYEGKHNHD 477 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 6.6E-30 | 232 | 298 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 24.398 | 234 | 298 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.05E-26 | 238 | 298 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.5E-37 | 239 | 297 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.7E-25 | 240 | 296 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.5E-37 | 405 | 479 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.32E-30 | 411 | 479 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 39.054 | 414 | 479 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.9E-40 | 419 | 478 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.7E-26 | 420 | 477 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:1900150 | Biological Process | regulation of defense response to fungus | ||||
GO:1900425 | Biological Process | negative regulation of defense response to bacterium | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 532 aa Download sequence Send to blast |
MAENEASSSS ASSSRAPMRP TITLPPRASV ENLFMGGLGG ISPGPMTLVS SFFSDPASEY 60 PSFSQLLAGA MASPAAFSGQ RQGFPPPPET TVSISKGKES GSGDMDFGFK QNRPSGLVIT 120 QSPMFTIPPG LSPAGLLGSP LLFSPGQGPF GMSHQQALAQ VTAQAAHPQS QMHIQPDYPS 180 SSAPPARSFS QFQSLTSNTT ANQQIPPPAS DPNVMKEASE VSLSDQRSEP ASSAVDKPAD 240 DGYNWRKYGQ KHVKGSEYPR SYYKCTHPNC PVRKKVERSL DGQVTEIIYK GQHNHHPPQS 300 SKRSKESGNP NGNYNLQGPS ELSSEGVAGT LNNSKDGMPS YSLRMKDQES SQATHDQVSG 360 SSEGEEVGDA ETIADGNDER ESKRRAIEVQ TSEAASSASH RTVAEPRIIV QTTSEVDLLD 420 DGYRWRKYGQ KVVKGNPYPR SYYKCTSQGC NVRKHVERAP SDPKAVITTY EGKHNHDVPA 480 ARNSSHNTAN NSVSQMRPHN PVVDKQEATR TGFPNNEQQP IALLRFKEEQ VT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-41 | 240 | 480 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 2e-41 | 240 | 480 | 8 | 78 | Probable WRKY transcription factor 4 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF096299 | 0.0 | AF096299.1 Nicotiana tabacum DNA-binding protein 2 (WRKY2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009619961.1 | 0.0 | PREDICTED: probable WRKY transcription factor 4 | ||||
Swissprot | Q9XI90 | 1e-173 | WRKY4_ARATH; Probable WRKY transcription factor 4 | ||||
TrEMBL | A0A1S3XR75 | 0.0 | A0A1S3XR75_TOBAC; probable WRKY transcription factor 4 | ||||
STRING | XP_009619961.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4107 | 24 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13960.1 | 1e-146 | WRKY DNA-binding protein 4 |
Publications ? help Back to Top | |||
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