PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009619856.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 330aa    MW: 35973.3 Da    PI: 8.3009
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009619856.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.71.2e-1760109255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+WvAeIr+p++   r+r +lg+f tae+Aa+a+++a+  l+g
  XP_009619856.1  60 RYRGVRQRS-WGKWVAEIREPRK---RTRRWLGTFATAEDAARAYDRAAIILYG 109
                     59****999.**********954...5999*******************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.33960117IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-2960117IPR001471AP2/ERF domain
CDDcd000183.13E-2160119No hitNo description
SuperFamilySSF541719.81E-2160118IPR016177DNA-binding domain
PfamPF008472.4E-1160105IPR001471AP2/ERF domain
SMARTSM003801.1E-3760123IPR001471AP2/ERF domain
PRINTSPR003673.2E-106172IPR001471AP2/ERF domain
PRINTSPR003673.2E-108399IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006970Biological Processresponse to osmotic stress
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0009744Biological Processresponse to sucrose
GO:0009749Biological Processresponse to glucose
GO:0010119Biological Processregulation of stomatal movement
GO:0010353Biological Processresponse to trehalose
GO:0010449Biological Processroot meristem growth
GO:0010896Biological Processregulation of triglyceride catabolic process
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0032880Biological Processregulation of protein localization
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048316Biological Processseed development
GO:0048527Biological Processlateral root development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MNTSPNAQNL IPSQTVPIPS EEKTTTISSA TVSDTTSTST SSNSNKKGKG KGGPDNNKFR  60
YRGVRQRSWG KWVAEIREPR KRTRRWLGTF ATAEDAARAY DRAAIILYGS RAQLNLQPST  120
GNNSSSSSQS SKKSSSSSST QTLRPLLPRP SGFGFTSLSS PNTAPPVSNS VGAGCGYVPY  180
GFFPAVQYSQ QLVQPHHHHH QQQQQQYAIC DGYGPEADNL AHEAGTTCSY SSPNPNPSHI  240
QEKPPKQEDQ SSHEYQNQQQ NRLSDETINP FVGSSMSVCS TQTMAAPVVS DPVAVMGGPG  300
SPVFWPTNDD SNYPAVNFWD YSYDSFLFDF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-1861116359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00674SELEXTransfer from GRMZM2G093595Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009619856.10.0PREDICTED: ethylene-responsive transcription factor ABI4
TrEMBLA0A314L7U61e-175A0A314L7U6_NICAT; Ethylene-responsive transcription factor abi4
STRINGXP_009619856.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40220.11e-27ERF family protein