PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009619745.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 195aa    MW: 22071 Da    PI: 5.1407
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009619745.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.1e-181362356
             AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                    y+GVr +k +g+Wv+eIr+p   gk++r++lg++ t+e+Aa+a++ a+  l+ge
  XP_009619745.1 13 YRGVRKRK-WGKWVSEIREP---GKKTRIWLGSYETPEMAAAAYDVAAFHLKGE 62
                    9****999.**********8...557***********************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.42E-221270IPR016177DNA-binding domain
SMARTSM003808.1E-361275IPR001471AP2/ERF domain
PROSITE profilePS5103223.2481269IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.7E-321270IPR001471AP2/ERF domain
PfamPF008472.3E-121362IPR001471AP2/ERF domain
PRINTSPR003671.1E-121324IPR001471AP2/ERF domain
CDDcd000187.48E-231371No hitNo description
PRINTSPR003671.1E-125171IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MEDHQESSNI QMYRGVRKRK WGKWVSEIRE PGKKTRIWLG SYETPEMAAA AYDVAAFHLK  60
GERARLNFPE LIDSFPKPSS SKPEDVQMAA HEAAMRFKIR KTPEPPESGG CGGGGTVVPV  120
RVGLSSSQIQ AINESPLDSP KMWMELTGAL LLRDPVREYT CPSYPFTDPM VLCEDIAEFG  180
EWDEVQQHHD SLWDF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-181174468ATERF1
3gcc_A1e-181174468ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754506e-71HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009619745.11e-145PREDICTED: ethylene-responsive transcription factor ERF022-like
SwissprotQ9C9I22e-49ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLA0A1S4CNX51e-142A0A1S4CNX5_TOBAC; ethylene-responsive transcription factor ERF022-like
STRINGXP_009619745.11e-144(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.11e-48ERF family protein