PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009617764.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 233aa MW: 26174.9 Da PI: 6.2147

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009617764.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	126.3	1.5e-39	8	108	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC+k+Cv+apyf+ eq + +f ++hk+FGasnv+kll+++p ++r +a+ +++yeA+ar++dP+yG+v++i++lqqq+ +l+a+l XP_009617764.1 8 PCGACKFLRRKCVKGCVFAPYFCYEQgATHFSAIHKVFGASNVSKLLAHIPVSDRGEAAVTIAYEAQARLQDPIYGCVSHIFALQQQVVNLQAQL 102 7***********************89***************************************************************** PP DUF260 95 allkee 100 a+lke+ XP_009617764.1 103 ASLKEQ 108 *99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.319	7	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.2E-38	8	106	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010311	Biological Process	lateral root formation
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
MTGSAGSPCG ACKFLRRKCV KGCVFAPYFC YEQGATHFSA IHKVFGASNV SKLLAHIPVS 60 DRGEAAVTIA YEAQARLQDP IYGCVSHIFA LQQQVVNLQA QLASLKEQAA HQNLQNGSNY 120 ASPNYEKFQD LQSWFHQSEN SNTNMPQFDS SLTSNNIGLT PYYGSHENMT STNYHMENYH 180 NMVLPKENMS NFEEGSCSID SYDMQTDHHN SRWTFQDDGD DLQSVAFRYL QHS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	8e-36	2	114	5	111	LOB family transfactor Ramosa2.1
5ly0_B	8e-36	2	114	5	111	LOB family transfactor Ramosa2.1
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Functional Description ? help Back to Top
Source	Description
UniProt	Involved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19. {ECO:0000269\|PubMed:17259263}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. {ECO:0000269\|PubMed:15659631, ECO:0000269\|PubMed:17259263}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ718286	1e-161	AJ718286.1 Nicotiana tabacum cDNA-AFLP-fragment BSTT4-42-390B, cultivar Bright Yellow 2.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009617764.1	1e-178	PREDICTED: LOB domain-containing protein 29-like
Swissprot	Q9M2J7	1e-62	LBD29_ARATH; LOB domain-containing protein 29
TrEMBL	A0A1S3XV59	1e-175	A0A1S3XV59_TOBAC; LOB domain-containing protein 29-like
STRING	XP_009617764.1	1e-177	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8446	22	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42440.1	2e-54	LBD family protein

Publications ? help Back to Top
Gupta A,Singh M,Laxmi A Interaction between glucose and brassinosteroid during the regulation of lateral root development in Arabidopsis. Plant Physiol., 2015. 168(1): p. 307-20 [PMID:25810094] Porco S, et al. Lateral root emergence in Arabidopsis is dependent on transcription factor LBD29 regulation of auxin influx carrier LAX3. Development, 2016. 143(18): p. 3340-9 [PMID:27578783] Lee K,Seo PJ High-temperature promotion of callus formation requires the BIN2-ARF-LBD axis in Arabidopsis. Planta, 2017. 246(4): p. 797-802 [PMID:28766014] Xu C,Cao H,Xu E,Zhang S,Hu Y Genome-Wide Identification of Arabidopsis LBD29 Target Genes Reveals the Molecular Events behind Auxin-Induced Cell Reprogramming during Callus Formation. Plant Cell Physiol., 2018. 59(4): p. 744-755 [PMID:29121271] Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]