PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009616960.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Protein Properties

Length: 918aa MW: 100221 Da PI: 6.8935

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009616960.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	59.8	4.6e-19	337	436	1	98
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k l+ sd+++ grlvlpkk+ae++ + ++e+ l+++d++g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ e XP_009616960.1 337 FEKMLSASDAGRIGRLVLPKKCAEAYfppiS--NPEGLPLKVQDLKGKEWMFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDIVTFSRIE-PE 427 89************************543..556667***********99899999999.*******************887.56 PP E..EEEEE- CS B3 90 felvvkvfr 98 ++lv++ ++ XP_009616960.1 428 GKLVMGCRK 436 656665554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	4.7E-30	333	437	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.31E-19	334	433	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.73E-23	335	436	No hit	No description
SMART	SM01019	7.8E-23	337	437	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.3E-16	337	436	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.082	337	438	IPR003340	B3 DNA binding domain
PROSITE profile	PS51050	13.676	592	642	IPR011124	Zinc finger, CW-type
Pfam	PF07496	5.9E-11	597	639	IPR011124	Zinc finger, CW-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 918 aa Download sequence Send to blast
MSSSAAPSSA TKVCFNTNCN QFVERPKKGW RRRTGEFADL CDRCASAYDD GKFCETFHLK 60 TSGWRSCESC GKQIHCGCIV SFHTFVLLDA GGIECLSCAR KSFILTPNPA WPPPSLFHPL 120 QPERIKDVNN WNPIAGSGPV PWRQAPSLFN GSAIQNELQP RTPFLDATGS VDRLCLGERP 180 STSSSDNNRK DSCEKLMNGN LKIGVPGTLE NGYAGLNHEE PPKSCISGPP QLSYAKNDLS 240 APSFSLTIGS ACKNEPTDHS KVSVSLQQQT TLSTPLGKQL GGHATVDYAG ETQVRNSKTR 300 GDGRGKHHLL PRYWPRITDE ELQQISGDSN SVITPLFEKM LSASDAGRIG RLVLPKKCAE 360 AYFPPISNPE GLPLKVQDLK GKEWMFQFRF WPNNNSRMYV LEGVTPCIQS MQLQAGDIVT 420 FSRIEPEGKL VMGCRKASTT LTADQGSEAC SNSNGVVTNG NVNTKSTKFS EVLANSTKKG 480 FSSTTHVAPA DSTIAWAETK MSDDMAMEFL GNNRSIRCKR KSSTLGSKTK RLRIDNEDLV 540 ELKVTVVQAQ GLMRPPSSDA PTVIVIEGCE FEEYEQDAPI IGRPAIPSVD HLGEKIQWVQ 600 CEDCFKWRKV PDSALLPSRW TCSENSWDSE RSVCSADQEL TANDLRDLLP RINKGLLKLH 660 DLCAAAKKMK ASKQETDLVE ALDGLDALAN LAILEEGETL PASSQATTKH PRHRPGCTCI 720 VCIQPPSGKG PKHKQSCDCI VCKSVKRRFK TLMLKREKKL SEKEAEAACQ KLQPQLAGQL 780 LDAGDIQESI DDAGHFSPQR GELNNEGYAD DPNYPNEKKS SALPCKGEID LNAKPERDDE 840 LSPGSDSGSI MHILQVAAEQ YVRHCGNGSF TGNHENGDGT GETNPNNCVI VGDTNQTDVD 900 HNRPLSIGTA ASLAPNNQ

Sequence ? help Back to Top

Protein Sequence Length: 918 aa Download sequence Send to blast

MSSSAAPSSA TKVCFNTNCN QFVERPKKGW RRRTGEFADL CDRCASAYDD GKFCETFHLK  60
TSGWRSCESC GKQIHCGCIV SFHTFVLLDA GGIECLSCAR KSFILTPNPA WPPPSLFHPL  120
QPERIKDVNN WNPIAGSGPV PWRQAPSLFN GSAIQNELQP RTPFLDATGS VDRLCLGERP  180
STSSSDNNRK DSCEKLMNGN LKIGVPGTLE NGYAGLNHEE PPKSCISGPP QLSYAKNDLS  240
APSFSLTIGS ACKNEPTDHS KVSVSLQQQT TLSTPLGKQL GGHATVDYAG ETQVRNSKTR  300
GDGRGKHHLL PRYWPRITDE ELQQISGDSN SVITPLFEKM LSASDAGRIG RLVLPKKCAE  360
AYFPPISNPE GLPLKVQDLK GKEWMFQFRF WPNNNSRMYV LEGVTPCIQS MQLQAGDIVT  420
FSRIEPEGKL VMGCRKASTT LTADQGSEAC SNSNGVVTNG NVNTKSTKFS EVLANSTKKG  480
FSSTTHVAPA DSTIAWAETK MSDDMAMEFL GNNRSIRCKR KSSTLGSKTK RLRIDNEDLV  540
ELKVTVVQAQ GLMRPPSSDA PTVIVIEGCE FEEYEQDAPI IGRPAIPSVD HLGEKIQWVQ  600
CEDCFKWRKV PDSALLPSRW TCSENSWDSE RSVCSADQEL TANDLRDLLP RINKGLLKLH  660
DLCAAAKKMK ASKQETDLVE ALDGLDALAN LAILEEGETL PASSQATTKH PRHRPGCTCI  720
VCIQPPSGKG PKHKQSCDCI VCKSVKRRFK TLMLKREKKL SEKEAEAACQ KLQPQLAGQL  780
LDAGDIQESI DDAGHFSPQR GELNNEGYAD DPNYPNEKKS SALPCKGEID LNAKPERDDE  840
LSPGSDSGSI MHILQVAAEQ YVRHCGNGSF TGNHENGDGT GETNPNNCVI VGDTNQTDVD  900
HNRPLSIGTA ASLAPNNQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j9a_A	7e-64	315	438	2	125	B3 domain-containing transcription repressor VAL1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975441	1e-171	HG975441.1 Solanum pennellii chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009616960.1	0.0	PREDICTED: B3 domain-containing protein Os07g0563300-like isoform X1
Swissprot	Q0D5G4	0.0	Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBL	A0A1J6ILC5	0.0	A0A1J6ILC5_NICAT; B3 domain-containing protein
STRING	XP_009616960.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7128	21	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30470.1	1e-144	high-level expression of sugar-inducible gene 2