PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009616821.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 333aa    MW: 37761.7 Da    PI: 6.5218
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009616821.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH407.1e-13153200355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     + h ++Er+RR+++ ++f  L  l+P +     kK++Ka++L  A++Y+k+Lq
  XP_009616821.1 153 QDHIIAERKRREKLSQRFIALSALIPGL-----KKMDKASVLGDAIKYLKQLQ 200
                     6799************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.821150199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-10153200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-17154212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.46E-13155204No hitNo description
SuperFamilySSF474594.58E-17155216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.1E-15156205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MEYHGFNQQW PINSFDELSA ISIAASFSEN LHESFISQPD FGLKRPAEMS QNIYLERPLK  60
NPKTNQSWNN SYENDHILSS HLINSNNYTN QVVNVKPKEE MSTISSNSSI TFATEHQNMV  120
SQESFANQNY MFKANCQGAK STVNTNGKLT QAQDHIIAER KRREKLSQRF IALSALIPGL  180
KKMDKASVLG DAIKYLKQLQ ERVKTLEEQT KKKSVESVVF VKKYELYGDG ENSSSDENYS  240
SGTLPIDEPL PEIEARFSER DVLVRIHCEK KKGLVDKTVA EIEKLHLSVI NTCALSFGTS  300
ALDITIIAQM DEEFAMTVQD FVKNLRSALK IFM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-13154228880Transcription factor MYC2
5gnj_B2e-13154228880Transcription factor MYC2
5gnj_E2e-13154228880Transcription factor MYC2
5gnj_F2e-13154228880Transcription factor MYC2
5gnj_G2e-13154228880Transcription factor MYC2
5gnj_I2e-13154228880Transcription factor MYC2
5gnj_M2e-13154228880Transcription factor MYC2
5gnj_N2e-13154228880Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1158163ERKRRE
2159164RKRREK
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2389281e-144AC238928.1 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-79n4 map 1, complete sequence.
GenBankHG9755131e-144HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009616821.10.0PREDICTED: transcription factor bHLH25-like
SwissprotQ9T0721e-65BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A1J6KYH20.0A0A1J6KYH2_NICAT; Transcription factor bhlh25
STRINGXP_009616821.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17602461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.16e-61bHLH family protein