PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009616115.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 444aa MW: 48503.1 Da PI: 9.6469

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009616115.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.3	2.8e-05	197	219	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 Cp Cg++F+ ++L++H+ + H XP_009616115.1 197 ACPECGEVFPKIESLEHHQAVrH 219 6******************9888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.016	196	224	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	196	219	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	1.15E-21	221	440	No hit	No description
Gene3D	G3DSA:3.90.228.10	2.2E-9	222	440	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 444 aa Download sequence Send to blast
MKKRGSSSSS TIVLLFHFLA LLFMALLTFT PEISENTQKQ PSKRRKKQQI KQQKEKQKQP 60 SSWDQFKNLL TCKQIENSAV HDPASKNSKL GSCSSICSFR DVVHGNTRVV HRADNSPESS 120 SLGQETRLLS KNKTSHHGQS SSSRSLARSN GSASSTYTTT SSSSSRGMQF RKLSGCYECH 180 MIVDPSRYPL PRSTICACPE CGEVFPKIES LEHHQAVRHA VSELGPEDSS RNIVEIIFKS 240 SWLKKDNPIC KIERILKVHN TKRTIQRFED CRDAVKIHAV ATGKKNPRCA ADGNELLRFY 300 CTSLTCSLGA RGSSSLCGSL PSCGVCSLIR HGFQGSKTSG VRTTASSGRA HDCLGSGTAK 360 RRAMLVCRVI AGRIKQTAKD VAASPTTEEE TCSGSGSGLL TNGSAIYDSV AGYAGIYSNL 420 EELYVFNPRA ILPCFVVIYE ALES

Sequence ? help Back to Top

Protein Sequence Length: 444 aa Download sequence Send to blast

MKKRGSSSSS TIVLLFHFLA LLFMALLTFT PEISENTQKQ PSKRRKKQQI KQQKEKQKQP  60
SSWDQFKNLL TCKQIENSAV HDPASKNSKL GSCSSICSFR DVVHGNTRVV HRADNSPESS  120
SLGQETRLLS KNKTSHHGQS SSSRSLARSN GSASSTYTTT SSSSSRGMQF RKLSGCYECH  180
MIVDPSRYPL PRSTICACPE CGEVFPKIES LEHHQAVRHA VSELGPEDSS RNIVEIIFKS  240
SWLKKDNPIC KIERILKVHN TKRTIQRFED CRDAVKIHAV ATGKKNPRCA ADGNELLRFY  300
CTSLTCSLGA RGSSSLCGSL PSCGVCSLIR HGFQGSKTSG VRTTASSGRA HDCLGSGTAK  360
RRAMLVCRVI AGRIKQTAKD VAASPTTEEE TCSGSGSGLL TNGSAIYDSV AGYAGIYSNL  420
EELYVFNPRA ILPCFVVIYE ALES

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009616115.1	0.0	PREDICTED: uncharacterized protein LOC104108715
TrEMBL	A0A1S3XLA1	0.0	A0A1S3XLA1_TOBAC; uncharacterized protein LOC107766445
STRING	XP_009616115.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5195	23	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	1e-151	C2H2-like zinc finger protein