PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009615802.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 347aa MW: 37811.8 Da PI: 5.2495

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009615802.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.3	1.6e-09	190	237	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN ++ L+el+P + +k a++L + +++++sLq XP_009615802.1 190 SHSLAERARREKINARMKLLQELVPGC----NKISGTAMVLDEIINHVQSLQ 237 8***********************9....89999*************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	6.70E-10	184	241	No hit	No description
SuperFamily	SSF47459	3.93E-15	184	255	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.634	186	236	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.9E-15	189	254	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.3E-7	190	237	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.2E-9	192	242	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MESTQVRSAS CGGKAGETAT GFHHICGEGQ SIIMPVPTEA AGNSFTALLE LPPNQALDLL 60 VHSDEMGSAE LSLPDNHNKP YYSSPLIDGG SAGEFAGEFS VFAAGNSPEN SSFPSNSQFV 120 KQEPVDSDSN PNSSPEFSNP TVDQKTTKRK ERQKKGKESS SKKSKRSAND TSEKLPYVHV 180 RAARGQATDS HSLAERARRE KINARMKLLQ ELVPGCNKIS GTAMVLDEII NHVQSLQRQV 240 EFLSMRLAAV NPRVDFNLDS LFATEQSGSA VDSNFASIVA PSIWPEGQTS GNRNQYQQLL 300 QIDGFNQPVW VREEDNSSFI TPENSFLTYD SSANSASLHQ NQLKMEL

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MESTQVRSAS CGGKAGETAT GFHHICGEGQ SIIMPVPTEA AGNSFTALLE LPPNQALDLL  60
VHSDEMGSAE LSLPDNHNKP YYSSPLIDGG SAGEFAGEFS VFAAGNSPEN SSFPSNSQFV  120
KQEPVDSDSN PNSSPEFSNP TVDQKTTKRK ERQKKGKESS SKKSKRSAND TSEKLPYVHV  180
RAARGQATDS HSLAERARRE KINARMKLLQ ELVPGCNKIS GTAMVLDEII NHVQSLQRQV  240
EFLSMRLAAV NPRVDFNLDS LFATEQSGSA VDSNFASIVA PSIWPEGQTS GNRNQYQQLL  300
QIDGFNQPVW VREEDNSSFI TPENSFLTYD SSANSASLHQ NQLKMEL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009615802.1	0.0	PREDICTED: transcription factor bHLH48 isoform X1
Refseq	XP_016452303.1	0.0	PREDICTED: transcription factor bHLH48-like isoform X1
TrEMBL	A0A1S3YJS8	0.0	A0A1S3YJS8_TOBAC; transcription factor bHLH48-like isoform X1
STRING	XP_009615802.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4029	23	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57800.2	1e-67	bHLH family protein