PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009614490.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 288aa    MW: 30638.1 Da    PI: 7.2971
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009614490.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.51e-202372255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    +y+GVr ++ +gr++AeIrdp   gk+ r++lg+f+taeeAaka++ a+++++g
  XP_009614490.1 23 HYRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAAKAYDTAAREFRG 72
                    6********.**********8...557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.13E-322380No hitNo description
PfamPF008478.5E-142372IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-322380IPR001471AP2/ERF domain
SMARTSM003807.0E-412386IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-222381IPR016177DNA-binding domain
PROSITE profilePS5103224.1572380IPR001471AP2/ERF domain
PRINTSPR003673.5E-112435IPR001471AP2/ERF domain
PRINTSPR003673.5E-114662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MKEKLNGSLK GGNVKTNGVK EVHYRGVRKR PWGRYAAEIR DPGKKSRVWL GTFDTAEEAA  60
KAYDTAAREF RGPKAKTNFP LPSENQCPSN SSGPTESSSG ETDVHAPDAP SEFDLTRPLG  120
TVVVGGDHGG RKSEVGLVRN GFPIFHHQPV MGALTSDSSS PVESSSGETG VHAPLELDLT  180
RRLNAVGEGG NPVRNGFPIF HPQPTVAVLP NGQSILLFDS TFVPTGVLNR PKPFGFEPVA  240
VEFNGVSGRV VHSDSSPSTA GNENYYGGGG VARRELNLDL NLAPPMEA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-212381261ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-212381564ATERF1
3gcc_A1e-212381564ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly and quickly induced by ethylene. {ECO:0000269|PubMed:10945353}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ6170312e-34AJ617031.1 Nicotiana plumbaginifolia cDNA-AFLP fragment, clone Np193.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009614490.10.0PREDICTED: ethylene-responsive transcription factor 4-like
SwissprotQ9LW499e-78ERF4_NICSY; Ethylene-responsive transcription factor 4
TrEMBLA0A1S4DKW80.0A0A1S4DKW8_TOBAC; ethylene-responsive transcription factor 4-like
STRINGXP_009614490.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.12e-27erf domain protein 9