PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009613624.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | Trihelix | ||||||||
Protein Properties | Length: 379aa MW: 42481.2 Da PI: 9.3466 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 61.7 | 1.7e-19 | 32 | 123 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqlea 87 +Wt++e+laLi+a+re++ +lrrg l+ ++W++v++++ + +++ qC++k+e+l++ry+++k+++ t + s++ +fd+++a XP_009613624.1 32 CWTQEETLALIDAYRERWYALRRGYLRTADWDAVAAAVtsrcPDASPAKTSAQCRHKMEKLRQRYRAEKQRSLASpTGRFFSSWFFFDNMDA 123 8************************************977776667788999*****************9988776889999*******985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 2.1E-20 | 31 | 124 | No hit | No description |
PROSITE profile | PS50090 | 6.806 | 33 | 93 | IPR017877 | Myb-like domain |
SMART | SM00595 | 8.2E-10 | 40 | 129 | IPR006578 | MADF domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 379 aa Download sequence Send to blast |
MSSNLDVTVA ETSPPAVEEK PPPPARRFPP PCWTQEETLA LIDAYRERWY ALRRGYLRTA 60 DWDAVAAAVT SRCPDASPAK TSAQCRHKME KLRQRYRAEK QRSLASPTGR FFSSWFFFDN 120 MDAMENGTTV ASIKLNQQLA EKQVPSIDPN LLKLKINQKN GVNFLDDWTP NIMLNHGVAK 180 TPERNIFSSK IPNGYCFNKE EMPNDVEFGS GFRVKTGISM KSKRSIMNST SFDCDEGSEY 240 NGSSNASDGF HVRNFGENFG ISSSRRNCGG NVEPNVDSRF STPKLGKKGG GVGSGGGGVK 300 RGRDPIEEMV LSIRLLGEGF MKVEKMKMEM AKEVEQMRME MEMKRNEMIL QSQKQIVDAF 360 VKVLNEVNNK NKNVVSPES |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009613624.1 | 0.0 | PREDICTED: trihelix transcription factor ASIL2-like | ||||
TrEMBL | A0A1S3Z335 | 0.0 | A0A1S3Z335_TOBAC; trihelix transcription factor ASIL2-like | ||||
STRING | XP_009613624.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12774 | 16 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44730.1 | 4e-31 | Trihelix family protein |