PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009613315.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | NF-YB | ||||||||
Protein Properties | Length: 247aa MW: 27731 Da PI: 5.8646 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 168.5 | 7.8e-53 | 66 | 159 | 2 | 95 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 reqdrf+Pianv+rim+k+lP +akis+daket+qecvsefisf+t+ea+d+cqre+rkti+++d+lwa+++lGf+ y+epl++yl++yre +g XP_009613315.1 66 REQDRFMPIANVIRIMRKILPPHAKISDDAKETIQECVSEFISFITGEANDRCQREQRKTITAEDVLWAMSKLGFDGYIEPLTMYLHRYREYDG 159 89*****************************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 4.0E-50 | 60 | 162 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 2.02E-38 | 68 | 165 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.5E-26 | 71 | 135 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 2.6E-16 | 99 | 117 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 102 | 118 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 2.6E-16 | 118 | 136 | No hit | No description |
PRINTS | PR00615 | 2.6E-16 | 137 | 155 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MDVGGSNGGG FHGYRRFPQT TSSDVKVTDQ MGMNLSAQLN QVIPTVVNND NNIHNVATED 60 SECTIREQDR FMPIANVIRI MRKILPPHAK ISDDAKETIQ ECVSEFISFI TGEANDRCQR 120 EQRKTITAED VLWAMSKLGF DGYIEPLTMY LHRYREYDGG ERGFLRGEPL LMKPHARVDP 180 AASTSIVMAP YPVPHNFAMA HHHHHGYFAF APMSNGYMQN HDNNGSTSQA AAVNGEVNVE 240 SYDEHME |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 3e-60 | 61 | 156 | 2 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. Plays a role in the regulation of the embryogenesis. Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000269|PubMed:12509518, ECO:0000269|PubMed:17322342}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018629766.1 | 1e-164 | PREDICTED: nuclear transcription factor Y subunit B-4-like | ||||
Swissprot | Q84W66 | 5e-67 | NFYB6_ARATH; Nuclear transcription factor Y subunit B-6 | ||||
TrEMBL | A0A1S3XJV1 | 1e-150 | A0A1S3XJV1_TOBAC; nuclear transcription factor Y subunit B-3-like | ||||
STRING | XP_009613315.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA111 | 24 | 356 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47670.1 | 9e-69 | nuclear factor Y, subunit B6 |