PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009612973.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | HSF | ||||||||
Protein Properties | Length: 477aa MW: 53233 Da PI: 5.6077 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 112 | 4.1e-35 | 19 | 109 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl k+ye+++d+++++++sw+ +g+sfvv+++ efa+ +Lp+yFkh+nf+SF+RQLn+YgF+k++ e+ weF++++F k++k+ll++ XP_009612973.1 19 FLLKTYEMVDDSQTDDIVSWTPTGHSFVVWNPPEFARILLPTYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFANEEFMKDQKHLLKN 104 9****************************************************************999.........****************** PP XXXXX CS HSF_DNA-bind 97 ikrkk 101 i+r+k XP_009612973.1 105 IHRRK 109 ***98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 6.9E-60 | 15 | 108 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 3.3E-38 | 15 | 108 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 3.76E-36 | 15 | 108 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 2.9E-31 | 19 | 108 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 7.0E-20 | 19 | 42 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 7.0E-20 | 57 | 69 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 58 | 82 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 7.0E-20 | 70 | 82 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 477 aa Download sequence Send to blast |
MDVISATAAA GGGGGPAPFL LKTYEMVDDS QTDDIVSWTP TGHSFVVWNP PEFARILLPT 60 YFKHNNFSSF IRQLNTYGFR KIDPERWEFA NEEFMKDQKH LLKNIHRRKP IHSHSHPPGS 120 TVDPERAAFE EEIDKLSREK SGLEANVLRF RQQHSTAKLQ LEEMTVRVGS IEQRQESLLT 180 FVEKAVLNPD FVERLAQKLE SMDISAFSKK RRLPQVDSSQ PVQENMLVDN HSSSRVEFGN 240 LCNQDFSNKL RLELSPAVSD INVVSCSTQS SNEDGGSPHR RISEGWSREV QLRTGGVIYT 300 PEAIELSDTG TSFTLKMDSS LPRAASNVES SRLHSLPQSL ISNEEVDGHI SCQLNLSLAS 360 CLSQVDKNQH SVRMPQIGQE IGKHSESQSD ASGKSPPNDD KTLPPSYDAT GNKQGAATTP 420 VRVNDVFWEQ FLTERPGCSD NEEASSSFKG NSYDEQDDRK SNQGVASNTR KVEHLTL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 3e-24 | 1 | 108 | 12 | 129 | Heat shock factor protein 1 |
5d5v_B | 3e-24 | 1 | 108 | 12 | 129 | Heat shock factor protein 1 |
5d5v_D | 3e-24 | 1 | 108 | 12 | 129 | Heat shock factor protein 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975451 | 0.0 | HG975451.1 Solanum pennellii chromosome ch12, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009612973.1 | 0.0 | PREDICTED: heat stress transcription factor A-5 | ||||
Refseq | XP_016456461.1 | 0.0 | PREDICTED: heat stress transcription factor A-5-like | ||||
Swissprot | Q94BZ5 | 1e-165 | HSFA5_ARATH; Heat stress transcription factor A-5 | ||||
TrEMBL | A0A1S3YVW1 | 0.0 | A0A1S3YVW1_TOBAC; heat stress transcription factor A-5-like | ||||
STRING | XP_009612973.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9461 | 21 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13980.1 | 1e-167 | HSF family protein |
Publications ? help Back to Top | |||
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