PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_009612865.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NF-YC

Protein Properties

Length: 138aa MW: 15448.8 Da PI: 10.395

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009612865.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	58.2	1.8e-18	15	99	14	97
NF-YC 14 tdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivp 97 ++++ ++Pl r+kki+k d+d++++ +ea l++ + elf+ lt +s a e+kr+t+k + av+r + + dfl+d p XP_009612865.1 15 GEVHQLQMPLGRVKKIMKLDQDINKVNSEALHLIASSTELFLEVLTEKSAQVALEKKRKTIKLEHLRVAVKRHQpTSDFLLDSLP 99 678999**************************************************************9976489***987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	2.84E-20	16	102	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	1.4E-21	18	85	IPR009072	Histone-fold
Pfam	PF00808	3.1E-19	21	84	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 138 aa Download sequence Send to blast
MAGEDQEKNS TAAGGEVHQL QMPLGRVKKI MKLDQDINKV NSEALHLIAS STELFLEVLT 60 EKSAQVALEK KRKTIKLEHL RVAVKRHQPT SDFLLDSLPV PSQPSDPSPK VQNRPRLSTE 120 KLLPTGTRRI EAFFQKST

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009612865.1	3e-96	PREDICTED: nuclear transcription factor Y subunit C-2
TrEMBL	A0A1S3ZFI9	2e-93	A0A1S3ZFI9_TOBAC; nuclear transcription factor Y subunit C-4-like
STRING	XP_009612865.1	1e-95	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11435	24	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43250.1	1e-48	nuclear factor Y, subunit C13