PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009611623.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 758aa MW: 83273.7 Da PI: 5.7733 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 66 | 5e-21 | 90 | 145 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r++ +++t++q++eLe++F+++++p+ ++r+eL+++lgL+ q+k+WFqN+R+++k XP_009611623.1 90 RKRYHRHTQHQIQELEAYFKECPHPDDKQRKELSRELGLEPLQIKFWFQNKRTQMK 145 789999***********************************************999 PP | |||||||
2 | START | 205.7 | 1.9e-64 | 278 | 498 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 ela +a++e+v++a +ep+W+ s + +n++e+ ++f+++ + +++ea+r++++v+m++++lve+l+d++ W+ ++ +a+t+ XP_009611623.1 278 ELAVAAMEEFVQLAHMQEPLWFPSIengtSLLNEEEYFRIFPRGIGpkpdgFKTEASRETAIVIMNHVNLVEILMDVN-HWSSMFSgvvsRASTI 371 57899********************999999************999********************************.**************** PP EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS START 83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170 +v+s+g galq++ ae+q++sp vp R+ +f+Ry++ +g+w++vdvS+d+ + p ++R++++pSg+li++++ng+skvtwveh+ XP_009611623.1 372 DVLSTGvagnfnGALQVILAEFQVPSPQVPtRECYFARYCKHRVDGTWAVVDVSLDHLRAIP----SARCRRRPSGCLIQEMPNGYSKVTWVEHI 462 ************************************************************99....5**************************** PP E--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 171 dlkgrlphwllrslvksglaegaktwvatlqrqcek 206 +++++ +h+++++lv+sgla+gak+w+atl+rqce+ XP_009611623.1 463 EVDDSAVHNIYKPLVSSGLAFGAKRWTATLDRQCER 498 **********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-22 | 69 | 145 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.27E-20 | 78 | 148 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.329 | 87 | 147 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.0E-20 | 88 | 151 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.82E-20 | 89 | 148 | No hit | No description |
Pfam | PF00046 | 1.4E-18 | 90 | 145 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 122 | 145 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 42.344 | 269 | 501 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.1E-33 | 271 | 500 | No hit | No description |
CDD | cd08875 | 2.45E-123 | 273 | 497 | No hit | No description |
SMART | SM00234 | 2.2E-62 | 278 | 498 | IPR002913 | START domain |
Pfam | PF01852 | 4.3E-54 | 279 | 498 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 1.8E-6 | 374 | 486 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 8.13E-26 | 521 | 748 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 758 aa Download sequence Send to blast |
MPSRISRRAN KMSSLVVNDG TDIGFSSSGL PLGQSSSMMD SQLHSLDMLS NTSESEMPRL 60 SSEDFGSKSG NEGNSAGDEQ DVNNKSLNKR KRYHRHTQHQ IQELEAYFKE CPHPDDKQRK 120 ELSRELGLEP LQIKFWFQNK RTQMKTKNER SENSQLRAEN EKLRAENLRF REALGNVSCP 180 NCGGQQPPIG EMSYDEHHLR LENTRLREEI ERISTIASKY VGKPFSNHNN GYSPPLDLGV 240 PAFSTPQSVN GDAYGDGEDV IMSSLIGPSD TEKPFIIELA VAAMEEFVQL AHMQEPLWFP 300 SIENGTSLLN EEEYFRIFPR GIGPKPDGFK TEASRETAIV IMNHVNLVEI LMDVNHWSSM 360 FSGVVSRAST IDVLSTGVAG NFNGALQVIL AEFQVPSPQV PTRECYFARY CKHRVDGTWA 420 VVDVSLDHLR AIPSARCRRR PSGCLIQEMP NGYSKVTWVE HIEVDDSAVH NIYKPLVSSG 480 LAFGAKRWTA TLDRQCERLA SAMATNFPTN DLGNIVLTNQ DSRKSMLKLA ERMVNSFCSG 540 MSATAGNQWS TLSGSGSDDN VRVMTRKSVD DPGRPPGIVL SAATSFWLPI SPKRVFDFLR 600 DENTRSEWDI LSNGGVVQEM AHIANGRETG NCVSLLRVNS SNSSQSNMLI LQESSTDPTN 660 SYVVYAPVDI GAMNIVLGGG DPDFVALLPS GFAILPDGPP GNSRVGCGGS LLTVAFQILV 720 DSIPTAKLSL GSVATVNNLI ACTVDRIKAS LLSESTPS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009611623.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HDG2-like isoform X1 | ||||
Refseq | XP_018629250.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HDG2-like isoform X1 | ||||
Swissprot | Q94C37 | 0.0 | HDG2_ARATH; Homeobox-leucine zipper protein HDG2 | ||||
TrEMBL | A0A1S4DBR4 | 0.0 | A0A1S4DBR4_TOBAC; homeobox-leucine zipper protein HDG2-like | ||||
STRING | XP_009611623.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA932 | 24 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05230.4 | 0.0 | homeodomain GLABROUS 2 |