PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

ERF

Protein Properties

Length: 277aa MW: 31260.9 Da PI: 5.51

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009609460.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	65.4	1.2e-20	127	177	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp + k +r++lg+f+ta eAaka+++a+ kl+g XP_009609460.1 127 HYRGVRQRP-WGKFAAEIRDP---NrKGTRVWLGTFDTAIEAAKAYDRAAFKLRG 177 8******.******9...6566***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	1.6E-32	126	186	IPR001471	AP2/ERF domain
CDD	cd00018	2.10E-32	126	185	No hit	No description
PROSITE profile	PS51032	24.131	127	185	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	5.23E-23	127	187	IPR016177	DNA-binding domain
SMART	SM00380	1.6E-37	127	191	IPR001471	AP2/ERF domain
Pfam	PF00847	6.1E-15	127	177	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.2E-10	128	139	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.2E-10	151	167	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MASPQENCTL DLIRQHLFDD DAFMECYCSE PTTLDSQNSS SSESLDQSFS FEPTLNYADT 60 AQSSSFEISS FFDNSKTEFD CSELETIQKQ SLNSRKQTSF KERKPSLNIA IPVKLQKVEV 120 VPSEKKHYRG VRQRPWGKFA AEIRDPNRKG TRVWLGTFDT AIEAAKAYDR AAFKLRGSKA 180 IVNFPLEVAN FKQEYNNEIP QSANSGRKRV RGTENEEQLV INKEMKREEE RVPTAAAPLT 240 PSSWSAIWDS GDGKGIFEVP PLSPLSPHIG YSQVVMI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	7e-31	126	188	1	63	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	205	211	GRKRVRG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional activator (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00556	DAP	Transfer from AT5G51190	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by ethylene. {ECO:0000269\|PubMed:10945353}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB016266	0.0	AB016266.1 Nicotiana sylvestris nserf4 gene for ethylene-responsive element binding factor, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009609460.1	0.0	PREDICTED: ethylene-responsive transcription factor 5-like
Swissprot	Q9LW48	1e-145	ERF5_NICSY; Ethylene-responsive transcription factor 5
TrEMBL	A0A1S4B4P1	0.0	A0A1S4B4P1_TOBAC; ethylene-responsive transcription factor 5-like
STRING	XP_009609460.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA963	23	89

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51190.1	8e-64	ERF family protein