PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009607578.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 333aa    MW: 36716.5 Da    PI: 6.6735
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009607578.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH406.8e-13123170455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h   Er RR+++++ f++L  llP++     +K +K++i+ +Av+YIk L+
  XP_009607578.1 123 MHIWTERERRKKMRNMFSNLHALLPQL----PPKADKSTIVDEAVNYIKTLE 170
                     56678*********************6....39****************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.157119169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-15119188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.12E-13122174No hitNo description
Gene3DG3DSA:4.10.280.101.0E-14122181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-10124170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-8127175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2604.3E-6251313No hitNo description
SuperFamilySSF550213.5E-7253312No hitNo description
PROSITE profilePS516719.621254333IPR002912ACT domain
CDDcd048733.01E-6255293No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MRLDFTFYSL SFSGPIFVLP NCKLNLFLNM DEGGEDCFIW ENQGWAFLNS DNSGGNGAKS  60
SGTKLPDTSH GKQLAISDAV AREIEMPGPS AGRKRTAPGK NGVKGNGEVN EGKVNGGESD  120
HEMHIWTERE RRKKMRNMFS NLHALLPQLP PKADKSTIVD EAVNYIKTLE HTLEKLQRQK  180
LERLHGMATS IITSQKLSAD SIISREEFLA DQGSTNNAAI RPTNNAANPI SMPAAFQTWT  240
SPNVILNVFG EEAHISVCCP RKPGLLSSIC YVLEKHKIEV VSAQISSNDH RSMYMIQAHF  300
QASGASDQFS ETFLVEEIYK QAAGEIILCV TSQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009607578.10.0PREDICTED: transcription factor bHLH95-like
RefseqXP_016473149.10.0PREDICTED: transcription factor bHLH95-like isoform X1
TrEMBLA0A1S4A9960.0A0A1S4A996_TOBAC; transcription factor bHLH95-like isoform X1
STRINGXP_009607578.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13242369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.17e-60bHLH family protein