PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009606952.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 446aa    MW: 48206.6 Da    PI: 6.9627
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009606952.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.62e-20222271255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a+++a+++++g
  XP_009606952.1 222 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALRFRG 271
                     7********.**********7.....337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103225.712222279IPR001471AP2/ERF domain
SMARTSM003806.3E-37222285IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-22222280IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.3E-33222280IPR001471AP2/ERF domain
PfamPF008474.0E-14222271IPR001471AP2/ERF domain
PRINTSPR003671.3E-11223234IPR001471AP2/ERF domain
CDDcd000183.02E-15230281No hitNo description
PRINTSPR003671.3E-11245261IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MCLLKVANPR KSSEYVRFTD TGDSETTTTT AAEGGAQPYG QSDQCFEEMI QQQIQQEADY  60
LLSTSSAMPM FTGYSQTREM SAMVTALTHV VSGSNYRPDI SGSVTTSFGG GGSGIYSANS  120
PSSAYSSTSS GSRAGQKRSR DQEESVTQIL EQSHQGVYGG FGEFRGGLPS SSVKAEATSM  180
VAPTISTITT VPAFTTTTTT AEIATTAAGG TSEETGGERR RRYRGVRQRP WGKWAAEIRD  240
PHKAARVWLG TFDTAEAAAR AYDEAALRFR GNRAKLNFPE NVRLLPQIQA SQPTTRLAIS  300
SSSTSASQFS FMAPISQPTP FFQPPHHHQQ PIQSSDMTRD YWEYSQLLQN PADFFDQQQP  360
SSLVEQMFFA SSRAVLHSNT TSSLGNSAAS STSSPSYPLL FSGQQSSYYR PQTNQNQGTS  420
SSSSSNSSNF SAPFWSSSSH YPPSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-23221282163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1217222ERRRRY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754515e-55HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009606952.10.0PREDICTED: ethylene-responsive transcription factor ABR1-like isoform X2
TrEMBLA0A314KM120.0A0A314KM12_NICAT; Ethylene-responsive transcription factor abr1
STRINGXP_009606951.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64750.15e-16ERF family protein