PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009606637.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 450aa    MW: 49151.6 Da    PI: 5.9437
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009606637.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.62e-20221270255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a+++a+++++g
  XP_009606637.1 221 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALRFRG 270
                     7********.**********7.....337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003807.0E-37221284IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.5E-33221279IPR001471AP2/ERF domain
PfamPF008474.0E-14221270IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-22221279IPR016177DNA-binding domain
PROSITE profilePS5103225.712221278IPR001471AP2/ERF domain
PRINTSPR003671.3E-11222233IPR001471AP2/ERF domain
CDDcd000189.51E-15229280No hitNo description
PRINTSPR003671.3E-11244260IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MCLLIKVANP GESGEHDRIP STGGDSESTT TTTEGGIPQL YEQLQSQSQS FEEMLRQQIQ  60
QETEYLMSSS ATPMFSGYSQ TREMSAMVTA LTHVVSGRRE GEWTYRPDIS AGAVTTSFAG  120
GSSIYSASSP SSSSSGSWAG QKRRRDQEES VAAEQVQRVY GAFGEFRGGE SSSSVKTEEA  180
SSMVAPPTTT STTTTTTTAA QTPPEPAEGG GAEETGERRR RYRGVRQRPW GKWAAEIRDP  240
HKAARVWLGT FDTAEAAARA YDEAALRFRG NRAKLNFPEN VRILPQQQQQ QPQATTRSAI  300
SSSSAASQFP LMAAATTPSP FFQTYQPQQQ QQPFQSSEMV RDYWEYSQLL QNPGEFHLQQ  360
QPSALLEQML FASSSMGLLQ SHTFPSYSSS SSLATSSAAS SPAYPLFYSA QQSRFFQPPQ  420
STHQNQTSSS SSSFPAPFWT SSTHYPPSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-22220281163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1216221ERRRRY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5384231e-86AJ538423.1 Nicotiana tabacum cDNA-AFLP-fragment BC1-M43-023.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009606637.10.0PREDICTED: ethylene-responsive transcription factor ABR1-like isoform X1
TrEMBLA0A1S4DAP30.0A0A1S4DAP3_TOBAC; ethylene-responsive transcription factor ABR1-like isoform X1
STRINGXP_009606637.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43222140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.11e-18ethylene response factor 110