PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009606529.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 500aa    MW: 57006.7 Da    PI: 4.7773
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009606529.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS266.96.8e-821174852373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgd....pmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPil 91 
                     ++lLl  Aea+++g+l la+ ++ rl+++ s + +    p+ Rla yft++L  + ++ s++el ++ + +     +ss +++ +++++e+sP++
  XP_009606529.1 117 TDLLLMGAEAIEAGNLDLASVVVLRLNTILSDQEKrensPLDRLAMYFTQGLLYKSLStSSHELLNQNQFQ----PESSPSITPFQMLQEISPYV 207
                     5789999*********************97776644566************97665551444444333333....4578899999********** PP

            GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                     kf+h+taNqaIlea++g+++vHi+Dfdi++G+QWp+L+  L +R +   slRiT+v+  +++++  +++t +rL++fA+++++pf f+ +  ++ 
  XP_009606529.1 208 KFAHFTANQAILEATKGSQQVHILDFDIMEGIQWPPLMVDLVERGNFNSSLRITAVVV-DKNNSFHVQKTCKRLQEFADSINLPFIFDQVFLTKE 301
                     *********************************************************9.66799*************************866666 PP

            GRAS 187 edleleeL.rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe....adhnsesFlerflealeyysalfdsleaklp 276
                     edl  e++  v+++ +l+ n++++  +++++  sl +   ++ + +++lsPk+vv+ve+e    ++  s sF+e f+eal++y+++ ds+  +++
  XP_009606529.1 302 EDL--ENIqGVESHNNLIANVMIHQLHIPQRGSSLVK---TFFNGLRRLSPKIVVLVEEElfnlTKIPSMSFVEFFCEALHHYTTISDSILGGFG 391
                     655..777246669*********999***88888888...********************7664455788********************66666 PP

            GRAS 277 res.eerikvErellgreivnvvacegaerrerhetlekWrerlee.aGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvs 369
                          + +++E+e+lg +i ++v +   e+ er    ekW+e l +  GF+++p+s++++ qak+l++ ++  gy v++e+  l l+Wk+rpL++
  XP_009606529.1 392 GGYkLALRVIEKEFLGVRILDCVRQFPCEKSER----EKWSEGLYSlKGFRQIPMSSSNVRQAKHLVSLFS-GGYWVQNEHCKLALCWKSRPLTT 481
                     65538999****************999996666....56***997658***********************.89********************* PP

            GRAS 370 vSaW 373
                     +S W
  XP_009606529.1 482 ASIW 485
                     **** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098539.33190467IPR005202Transcription factor GRAS
PfamPF035142.3E-79117485IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MECENFQPSY INPFLEYSTL ETTFPWPNSS INPHCSIQDF VTVVNDVDIQ DYFQNDFDFI  60
DGDVDFHVQN SQKFPLFSSQ QVVQEDTDFL NEGQKLRVYS PELKLLQDQL MEETSITDLL  120
LMGAEAIEAG NLDLASVVVL RLNTILSDQE KRENSPLDRL AMYFTQGLLY KSLSTSSHEL  180
LNQNQFQPES SPSITPFQML QEISPYVKFA HFTANQAILE ATKGSQQVHI LDFDIMEGIQ  240
WPPLMVDLVE RGNFNSSLRI TAVVVDKNNS FHVQKTCKRL QEFADSINLP FIFDQVFLTK  300
EEDLENIQGV ESHNNLIANV MIHQLHIPQR GSSLVKTFFN GLRRLSPKIV VLVEEELFNL  360
TKIPSMSFVE FFCEALHHYT TISDSILGGF GGGYKLALRV IEKEFLGVRI LDCVRQFPCE  420
KSEREKWSEG LYSLKGFRQI PMSSSNVRQA KHLVSLFSGG YWVQNEHCKL ALCWKSRPLT  480
TASIWVPTSS SSSPSNSISF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-3912448927382Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009606529.10.0PREDICTED: nodulation-signaling pathway 2 protein-like
TrEMBLA0A1S3YVQ60.0A0A1S3YVQ6_TOBAC; nodulation-signaling pathway 2 protein-like
STRINGXP_009606529.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA133661417
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-46GRAS family protein