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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009606529.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GRAS | ||||||||
Protein Properties | Length: 500aa MW: 57006.7 Da PI: 4.7773 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 266.9 | 6.8e-82 | 117 | 485 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgd....pmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPil 91 ++lLl Aea+++g+l la+ ++ rl+++ s + + p+ Rla yft++L + ++ s++el ++ + + +ss +++ +++++e+sP++ XP_009606529.1 117 TDLLLMGAEAIEAGNLDLASVVVLRLNTILSDQEKrensPLDRLAMYFTQGLLYKSLStSSHELLNQNQFQ----PESSPSITPFQMLQEISPYV 207 5789999*********************97776644566************97665551444444333333....4578899999********** PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186 kf+h+taNqaIlea++g+++vHi+Dfdi++G+QWp+L+ L +R + slRiT+v+ +++++ +++t +rL++fA+++++pf f+ + ++ XP_009606529.1 208 KFAHFTANQAILEATKGSQQVHILDFDIMEGIQWPPLMVDLVERGNFNSSLRITAVVV-DKNNSFHVQKTCKRLQEFADSINLPFIFDQVFLTKE 301 *********************************************************9.66799*************************866666 PP GRAS 187 edleleeL.rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe....adhnsesFlerflealeyysalfdsleaklp 276 edl e++ v+++ +l+ n++++ +++++ sl + ++ + +++lsPk+vv+ve+e ++ s sF+e f+eal++y+++ ds+ +++ XP_009606529.1 302 EDL--ENIqGVESHNNLIANVMIHQLHIPQRGSSLVK---TFFNGLRRLSPKIVVLVEEElfnlTKIPSMSFVEFFCEALHHYTTISDSILGGFG 391 655..777246669*********999***88888888...********************7664455788********************66666 PP GRAS 277 res.eerikvErellgreivnvvacegaerrerhetlekWrerlee.aGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvs 369 + +++E+e+lg +i ++v + e+ er ekW+e l + GF+++p+s++++ qak+l++ ++ gy v++e+ l l+Wk+rpL++ XP_009606529.1 392 GGYkLALRVIEKEFLGVRILDCVRQFPCEKSER----EKWSEGLYSlKGFRQIPMSSSNVRQAKHLVSLFS-GGYWVQNEHCKLALCWKSRPLTT 481 65538999****************999996666....56***997658***********************.89********************* PP GRAS 370 vSaW 373 +S W XP_009606529.1 482 ASIW 485 **** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 39.331 | 90 | 467 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.3E-79 | 117 | 485 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 500 aa Download sequence Send to blast |
MECENFQPSY INPFLEYSTL ETTFPWPNSS INPHCSIQDF VTVVNDVDIQ DYFQNDFDFI 60 DGDVDFHVQN SQKFPLFSSQ QVVQEDTDFL NEGQKLRVYS PELKLLQDQL MEETSITDLL 120 LMGAEAIEAG NLDLASVVVL RLNTILSDQE KRENSPLDRL AMYFTQGLLY KSLSTSSHEL 180 LNQNQFQPES SPSITPFQML QEISPYVKFA HFTANQAILE ATKGSQQVHI LDFDIMEGIQ 240 WPPLMVDLVE RGNFNSSLRI TAVVVDKNNS FHVQKTCKRL QEFADSINLP FIFDQVFLTK 300 EEDLENIQGV ESHNNLIANV MIHQLHIPQR GSSLVKTFFN GLRRLSPKIV VLVEEELFNL 360 TKIPSMSFVE FFCEALHHYT TISDSILGGF GGGYKLALRV IEKEFLGVRI LDCVRQFPCE 420 KSEREKWSEG LYSLKGFRQI PMSSSNVRQA KHLVSLFSGG YWVQNEHCKL ALCWKSRPLT 480 TASIWVPTSS SSSPSNSISF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 1e-39 | 124 | 489 | 27 | 382 | Protein SCARECROW |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009606529.1 | 0.0 | PREDICTED: nodulation-signaling pathway 2 protein-like | ||||
TrEMBL | A0A1S3YVQ6 | 0.0 | A0A1S3YVQ6_TOBAC; nodulation-signaling pathway 2 protein-like | ||||
STRING | XP_009606529.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13366 | 14 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08250.1 | 1e-46 | GRAS family protein |