PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009601943.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C3H | ||||||||
Protein Properties | Length: 719aa MW: 80333.1 Da PI: 6.4856 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 17.4 | 8.1e-06 | 126 | 146 | 4 | 25 |
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 ++C ff++ G+C GdrC+F H XP_009601943.1 126 VPCIFFQQ-GFCLKGDRCPFFH 146 79******.***********88 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 11.282 | 32 | 61 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0021 | 33 | 60 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF15663 | 7.8E-11 | 33 | 87 | No hit | No description |
PROSITE profile | PS50103 | 10.455 | 63 | 89 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.73 | 65 | 88 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.573 | 122 | 149 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.1E-4 | 123 | 148 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.31E-5 | 125 | 147 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 0.09 | 127 | 146 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 719 aa Download sequence Send to blast |
MVGPTPPPQQ LQIQTPSTAP PPAMLSAEDE ALKRNTDCVY FLASPLTCKK GSDCEYRHSD 60 VARLNPRDCW YWLNGSCLNP KCGFRHPPLD GFLGAQVQTP TGSSVPPVAS VAPTPNVPYG 120 SGKQGVPCIF FQQGFCLKGD RCPFFHAPIS VSNKAPPHPL STASTEKTPF KKAFGGLEKC 180 VQGKTFSQAN TWKSGELPVQ TQPVRKLGTH LSKNDAAFNE NVLPPNSVID VVHHRHKPKS 240 VPPTNGNPIG RSNRMQQSVR FDDHSSIQNK DDEISRELSP GFDVLVDDEL RGNAFYQAED 300 QYGRNEGRNE YDIGHSADYT SVADIDQDAY HDVYGLDSHD RLPGRSGSVQ HRASSERIQG 360 ESAHLERRRH GRVYSPEEVR ESDLRHRLSK HKRVNGLRSV ISHDYKSEKH AEDRGYQSSR 420 RDRHHLPSHD SSVASRLRGR IKLPSRPSSP TNGTDMRLDR DMDRARDRGR LSLERPQLFS 480 QQGRLRDRIK GRVQEDLNNA GRNNSGPRLR RDISENDSDF SGPRSLAELK GRKTAETSEQ 540 NVNEQQALGK RKLQKHDGYQ QTGGDLSFEG PMPLQEILKR KRSETGMKSV KSEDYQHERK 600 AHSLVTSSIS RSGSDLGQKE ESDPASGKKN GFQETIAAGH QSPVHHGANE FEAEEGMLVE 660 EEDDQDTEGH DQRDYDYEQV DGEDYNLDEG ENADAGEEYL DDDDDDGDDF AKKMGVVFS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009601943.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 17 | ||||
TrEMBL | A0A1S4CQ78 | 0.0 | A0A1S4CQ78_TOBAC; zinc finger CCCH domain-containing protein 17-like | ||||
STRING | XP_009601943.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4024 | 16 | 33 |