PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009600446.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | YABBY | ||||||||
Protein Properties | Length: 181aa MW: 19829.3 Da PI: 8.892 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 146.8 | 2.2e-45 | 23 | 165 | 1 | 163 |
YABBY 1 advfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesasts 95 +d+++sse++Cyv+C+fCnt+lav +P++ l+ +vtv+CGhC++l ++ + l+ + +++++l+ ++ ++ ++ + XP_009600446.1 23 MDLVQSSEHLCYVRCSFCNTVLAVGIPYKRLLDTVTVKCGHCSNLSFLSTR---------PPLQG--------QCFDHQSALQHQTFFSDFKKGQ 100 57899**************************************97543222.........22222........2222222222222222322222 PP YABBY 96 vsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahf 163 ss s++++ ++p++p v++PPek+ r Psaynrf+k+eiqrika+nP+i hreafsaaaknWa + XP_009600446.1 101 SSS---SSSSEPSSPKAPFVVKPPEKKHRLPSAYNRFMKDEIQRIKAANPEIPHREAFSAAAKNWARY 165 222...3344567899999***********************************************75 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 5.0E-54 | 28 | 165 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.1E-8 | 109 | 163 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 5.3E-5 | 119 | 164 | IPR009071 | High mobility group box domain |
CDD | cd01390 | 9.27E-6 | 126 | 162 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010254 | Biological Process | nectary development | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0048479 | Biological Process | style development |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MSSSSPSSAS SCVNLEAADK NSMDLVQSSE HLCYVRCSFC NTVLAVGIPY KRLLDTVTVK 60 CGHCSNLSFL STRPPLQGQC FDHQSALQHQ TFFSDFKKGQ SSSSSSSEPS SPKAPFVVKP 120 PEKKHRLPSA YNRFMKDEIQ RIKAANPEIP HREAFSAAAK NWARYIPNTP NGTLAESSNN 180 A |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for the initiation of nectary development. Also involved in suppressing early radial growth of the gynoecium, in promoting its later elongation and in fusion of its carpels by regulating both cell division and expansion. Establishes the polar differentiation in the carpels by specifying abaxial cell fate in the ovary wall. Regulates both cell division and expansion. {ECO:0000269|PubMed:10225997, ECO:0000269|PubMed:10225998, ECO:0000269|PubMed:10535738, ECO:0000269|PubMed:11714690, ECO:0000269|PubMed:15598802, ECO:0000269|Ref.10}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00220 | DAP | Transfer from AT1G69180 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by SPT and by A class genes AP2 and LUG in the outer whorl. In the third whorl, B class genes AP3 and PI, and the C class gene AG act redundantly with each other and in combination with SEP1, SEP2, SEP3, SHP1 and SHP2 to activate CRC in nectaries and carpels. LFY enhances its expression. {ECO:0000269|PubMed:10225998, ECO:0000269|PubMed:15598802}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY854799 | 0.0 | AY854799.1 Nicotiana tabacum isolate 1 CRABS CLAW mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009600446.1 | 1e-132 | PREDICTED: protein CRABS CLAW-like | ||||
Swissprot | Q8L925 | 1e-66 | CRC_ARATH; Protein CRABS CLAW | ||||
TrEMBL | Q5EMN3 | 1e-131 | Q5EMN3_TOBAC; CRABS CLAW | ||||
STRING | XP_009600446.1 | 1e-132 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5210 | 23 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69180.1 | 7e-68 | YABBY family protein |
Publications ? help Back to Top | |||
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