PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

ERF

Protein Properties

Length: 179aa MW: 19879.4 Da PI: 8.4774

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009600167.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.8	5e-17	31	79	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ykG+r +k +g+WvAeIr+p +kr r++lg++ t+ Aa+a++ a +l+g XP_009600167.1 31 YKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPVAAARAYDTAVYYLRG 79 9***99.******9...336***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51257	5	1	20	No hit	No description
SMART	SM00380	7.2E-37	30	93	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	21.97	30	87	IPR001471	AP2/ERF domain
CDD	cd00018	3.21E-26	30	89	No hit	No description
SuperFamily	SSF54171	7.85E-21	30	88	IPR016177	DNA-binding domain
Pfam	PF00847	9.6E-11	30	79	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	9.9E-30	30	88	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.6E-11	31	42	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.6E-11	69	89	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 179 aa Download sequence Send to blast
MEVDGGRSGG AAVVGGGGGC CSGKIKKERI YKGIRMRKWG KWVAEIREPN KRSRIWLGSY 60 STPVAAARAY DTAVYYLRGP SARLNFPELL VGDGGLSDLS AASIRKKAVE VGARVDAIQN 120 SLAIHDHNHD HDHDQQRPRE SRNHCCENGS PAQLKPCWFQ EKPDLNLKPE PEDPELEYW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	1e-14	31	94	15	80	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009600167.1	1e-131	PREDICTED: ethylene-responsive transcription factor ERF011-like
Swissprot	Q9FH94	2e-48	ERF10_ARATH; Ethylene-responsive transcription factor ERF010
TrEMBL	A0A1S4BC84	1e-129	A0A1S4BC84_TOBAC; ethylene-responsive transcription factor ERF011-like
STRING	XP_009600167.1	1e-130	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA943	23	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50260.1	1e-44	cooperatively regulated by ethylene and jasmonate 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]