PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009598941.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

M-type_MADS

Protein Properties

Length: 107aa MW: 12096.1 Da PI: 9.8154

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009598941.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	53.9	2.2e-17	12	59	2	49
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +i+ +sn vtf+kRr g++K +EL++LC++e+a+i+f + k++ + XP_009598941.1 12 KISKESNFLVTFTKRRSGLFKNDSELCILCGVEIAIIVFCPGHKVFSF 59 69999***********************************99999877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	20.773	3	63	IPR002100	Transcription factor, MADS-box
SMART	SM00432	3.7E-20	3	62	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	7.06E-23	4	90	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.2E-14	5	25	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.3E-18	12	59	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.2E-14	25	40	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.2E-14	40	61	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 107 aa Download sequence Send to blast
MSKGRQKIEM TKISKESNFL VTFTKRRSGL FKNDSELCIL CGVEIAIIVF CPGHKVFSFG 60 HPNVESIMDR FLSRNIPSST TANSSTTYQL VEAFVEAHKL KMQMFAN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3kov_A	1e-16	4	94	1	87	Myocyte-specific enhancer factor 2A
3kov_B	1e-16	4	94	1	87	Myocyte-specific enhancer factor 2A
3kov_I	1e-16	4	94	1	87	Myocyte-specific enhancer factor 2A
3kov_J	1e-16	4	94	1	87	Myocyte-specific enhancer factor 2A
3p57_A	1e-16	4	94	1	87	Myocyte-specific enhancer factor 2A
3p57_B	1e-16	4	94	1	87	Myocyte-specific enhancer factor 2A
3p57_C	1e-16	4	94	1	87	Myocyte-specific enhancer factor 2A
3p57_D	1e-16	4	94	1	87	Myocyte-specific enhancer factor 2A
3p57_I	1e-16	4	94	1	87	Myocyte-specific enhancer factor 2A
3p57_J	1e-16	4	94	1	87	Myocyte-specific enhancer factor 2A
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269\|PubMed:18334668}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009598941.1	9e-75	PREDICTED: agamous-like MADS-box protein AGL62
Swissprot	Q9FKK2	2e-33	AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBL	A0A1J6KVU1	3e-50	A0A1J6KVU1_NICAT; Agamous-like mads-box protein agl62 (Fragment)
TrEMBL	A0A1U7Y0E1	4e-50	A0A1U7Y0E1_NICSY; agamous-like MADS-box protein AGL62
STRING	XP_009598941.1	3e-74	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA204	24	223

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	8e-36	AGAMOUS-like 62

Publications ? help Back to Top
Xu W, et al. Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds. Plant Cell, 2016. 28(6): p. 1343-60 [PMID:27233529] Figueiredo DD,Batista RA,Roszak PJ,Köhler C Auxin production couples endosperm development to fertilization. Nat Plants, 2015. 1: p. 15184 [PMID:27251719] Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C Auxin production in the endosperm drives seed coat development in Arabidopsis. Elife, 2017. [PMID:27848912] Fiume E,Coen O,Xu W,Lepiniec L,Magnani E Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal. Plant Signal Behav, 2017. 12(8): p. e1339000 [PMID:28613109] Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]