PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009598697.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 349aa    MW: 39241.1 Da    PI: 4.5864
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009598697.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.92.9e-194393155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    ++y GVr+++ +gr++AeIrdp++   + r++lg+f+taeeAa a+++a+++++ 
  XP_009598697.1 43 CRYLGVRRRP-WGRYAAEIRDPNT---KERHWLGTFDTAEEAALAYDRAARSMRS 93
                    6899******.**********933...5************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.6E-124393IPR001471AP2/ERF domain
CDDcd000184.72E-2643106No hitNo description
SMARTSM003809.0E-2744107IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-184499IPR016177DNA-binding domain
PROSITE profilePS5103220.15244101IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-2644100IPR001471AP2/ERF domain
PRINTSPR003671.6E-84556IPR001471AP2/ERF domain
PRINTSPR003671.6E-86783IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0010030Biological Processpositive regulation of seed germination
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MNIIKSSTSS STNKSTKPRK NAGSSVSSTQ SGKQNAEEQQ NNCRYLGVRR RPWGRYAAEI  60
RDPNTKERHW LGTFDTAEEA ALAYDRAARS MRSNNNKSNK PIRTNFVYSD MPHGSSVTCM  120
ISPDEEYHHQ FQLHQQQQQQ FFNQADQNAA PTVNYTDFSH FSISNMNNNN SNGDGGGEDF  180
ALQQFYNSNY NVHMEDGYRN NSNNTTSIEL PPLPEDITSS GNCYYFSEEV DQDTQFSATT  240
AISSVSNVGY YSSRSSLLNE MLPMDFRAND EQLDSGANII EEAASYEYQF GGGNTVTTTN  300
NTTSVTGSCN NNNNYFGFDD WLQPQQPLQY CSSNIMQNES NNNLGCWFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-1945105667ATERF1
3gcc_A6e-1945105667ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00509DAPTransfer from AT5G13910Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009598697.10.0PREDICTED: ethylene-responsive transcription factor ESR1-like
TrEMBLA0A1S3ZA230.0A0A1S3ZA23_TOBAC; ethylene-responsive transcription factor ESR1-like
STRINGXP_009598697.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53831934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.17e-28ERF family protein