PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

GRAS

Protein Properties

Length: 583aa MW: 65002.5 Da PI: 7.0126

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009594671.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	426.5	2.1e-130	213	582	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 l++lL++cA+a+++++l +l+a+ ++ +s +gdp+qRl ay++e+L ar s++++y+al+++e + + l+++++++e++P+lkf++ XP_009594671.1 213 LKQLLIACARALAENKLDDFGSLIAKARNAVSITGDPIQRLGAYIVEGLVARKEASGTNIYRALRCKEPA---GRDLLSYMQILYEICPYLKFGY 304 689****************************************************************9...9***************** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188 ++aN aI ea +e+r+HiiDf+i qG+QW++LlqaLa+Rp+g+p++RiTg+++p s+ + + l +gerLa++ +++++p+ef++ v + XP_009594671.1 305 MAANGAIAEACRNEDRIHIIDFQIAQGTQWLTLLQALAARPSGAPHVRITGIDDPVSKyaRGDGLTLVGERLAEVSKKFNIPVEFHA-VPVFAPE 398 ***************************************************999999**********************.6888999 PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283 ++ ++L+v+pgEalaVn+ l lh+++desv+++++rde+L++vkslsPkvv++veqe+++n+++F+ rfleal+yy a+f+s++++l r+ +eri XP_009594671.1 399 VTRDMLDVRPGEALAVNFPLVLHHTPDESVDVTNPRDELLRMVKSLSPKVVTLVEQESNTNTAPFFPRFLEALDYYCAMFESIDVTLERDRKERI 493 ******************************************************************************************* PP GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 +vE+++l+r+ivn++aceg+er+erhe l+kW+ r+++aGF+++pls+++++ +k+llr ++ + y++ e++g+++lgWkdr+L+s+SaW XP_009594671.1 494 NVEQHCLARDIVNIIACEGKERVERHELLGKWKLRFTMAGFRQYPLSSYVNSVIKSLLRCYS-EHYTLVEKDGAMLLGWKDRNLISASAW 582 ******************************************************9999.66*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	65.857	187	564	IPR005202	Transcription factor GRAS
Pfam	PF03514	7.2E-128	213	582	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 583 aa Download sequence Send to blast
MESHHLYGYG VTGANLSYSY SKATTPSLPN RLLGTLKFDS RNSPNSPFAN YFDPDTPTTL 60 SDSLEQHSST ENISGTSPSS NSSLDYNHYF HRPSPSPNFR PNTLLVRSGE TSLQQYANHS 120 QNMKHALLQL ETALMGPEEE ATTSSPSAGD IKQPQTSGQR SRMWNQEGQV SRRIETQPLH 180 VSAFGISSSG IQSEKRHKAM EDLSLQGIPS GNLKQLLIAC ARALAENKLD DFGSLIAKAR 240 NAVSITGDPI QRLGAYIVEG LVARKEASGT NIYRALRCKE PAGRDLLSYM QILYEICPYL 300 KFGYMAANGA IAEACRNEDR IHIIDFQIAQ GTQWLTLLQA LAARPSGAPH VRITGIDDPV 360 SKYARGDGLT LVGERLAEVS KKFNIPVEFH AVPVFAPEVT RDMLDVRPGE ALAVNFPLVL 420 HHTPDESVDV TNPRDELLRM VKSLSPKVVT LVEQESNTNT APFFPRFLEA LDYYCAMFES 480 IDVTLERDRK ERINVEQHCL ARDIVNIIAC EGKERVERHE LLGKWKLRFT MAGFRQYPLS 540 SYVNSVIKSL LRCYSEHYTL VEKDGAMLLG WKDRNLISAS AWH

Sequence ? help Back to Top

Protein Sequence Length: 583 aa Download sequence Send to blast

MESHHLYGYG VTGANLSYSY SKATTPSLPN RLLGTLKFDS RNSPNSPFAN YFDPDTPTTL  60
SDSLEQHSST ENISGTSPSS NSSLDYNHYF HRPSPSPNFR PNTLLVRSGE TSLQQYANHS  120
QNMKHALLQL ETALMGPEEE ATTSSPSAGD IKQPQTSGQR SRMWNQEGQV SRRIETQPLH  180
VSAFGISSSG IQSEKRHKAM EDLSLQGIPS GNLKQLLIAC ARALAENKLD DFGSLIAKAR  240
NAVSITGDPI QRLGAYIVEG LVARKEASGT NIYRALRCKE PAGRDLLSYM QILYEICPYL  300
KFGYMAANGA IAEACRNEDR IHIIDFQIAQ GTQWLTLLQA LAARPSGAPH VRITGIDDPV  360
SKYARGDGLT LVGERLAEVS KKFNIPVEFH AVPVFAPEVT RDMLDVRPGE ALAVNFPLVL  420
HHTPDESVDV TNPRDELLRM VKSLSPKVVT LVEQESNTNT APFFPRFLEA LDYYCAMFES  480
IDVTLERDRK ERINVEQHCL ARDIVNIIAC EGKERVERHE LLGKWKLRFT MAGFRQYPLS  540
SYVNSVIKSL LRCYSEHYTL VEKDGAMLLG WKDRNLISAS AWH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	8e-64	210	583	1	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	May play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269\|PubMed:12591613}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269\|PubMed:12591613}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU878027	0.0	EU878027.1 Capsicum annuum scarecrow-like protein (SCL1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009594671.1	0.0	PREDICTED: scarecrow-like protein 21
Swissprot	Q69VG1	0.0	CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBL	A0A1S3ZG68	0.0	A0A1S3ZG68_TOBAC; scarecrow-like protein 21
STRING	XP_009594671.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3441	24	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48150.2	1e-172	GRAS family protein

Publications ? help Back to Top
Day RB, et al. Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells. Plant Mol. Biol., 2004. 54(2): p. 261-72 [PMID:15159627]