PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009594399.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 268aa    MW: 30934.6 Da    PI: 5.5907
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009594399.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.35.6e-08150195555
                     HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      +++ r+RR++i ++ +eL +l+P         +++ ae+L+ + +Y+k Lq
  XP_009594399.1 150 QSIAARQRRKKITEKTQELGKLIPGgH------RMNTAEMLQATFKYVKFLQ 195
                     67889*******************955......9*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.106.5E-12142201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.1E-12142203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.65E-10143198No hitNo description
PROSITE profilePS5088812.862145194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-5150195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-9151200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MASLSYYSNS NSNSNLEPNM QQLNDFLFDF NYDHSFPKPE TCYFDPFFDS NPAVEPNYSS  60
CFVPEIQEYS DFQMSNPKRQ KVFQFDNCHH QDIITQGNLS NGQIYQDFSS FSFPENIPTP  120
QLEYFPSPPI FSSSSHDQVV EKNEKKMSAQ SIAARQRRKK ITEKTQELGK LIPGGHRMNT  180
AEMLQATFKY VKFLQAQVGL LEFMGSHQEN GKSYETPDLQ KLVGSSLIQE KLYSSDNCLV  240
PKVFLEELDK NHEFQHSQGL DQVKKLIR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009594399.10.0PREDICTED: transcription factor bHLH53-like
RefseqXP_016442231.10.0PREDICTED: transcription factor bHLH53-like
TrEMBLA0A1S3XQK20.0A0A1S3XQK2_TOBAC; transcription factor bHLH53-like
STRINGXP_009594399.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38562246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.13e-24bHLH family protein