PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009594350.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 357aa    MW: 39983.2 Da    PI: 4.6419
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009594350.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.12.8e-2081131155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                     ++y+GVr++  +g+WvAeIr+p     +  +r +lg+f+ta eAa a+++a+++++g
  XP_009594350.1  81 CKYRGVRQRT-WGKWVAEIREP-----HrgRRLWLGTFDTAIEAALAYDEAARAMYG 131
                     79*****999.**********6.....337************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-1481131IPR001471AP2/ERF domain
CDDcd000182.54E-3281140No hitNo description
SuperFamilySSF541713.86E-2182139IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.3E-3182140IPR001471AP2/ERF domain
SMARTSM003801.7E-3682145IPR001471AP2/ERF domain
PROSITE profilePS5103221.50982139IPR001471AP2/ERF domain
PRINTSPR003677.3E-108394IPR001471AP2/ERF domain
PRINTSPR003677.3E-10105121IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MAILDQASNM MSLPLDYTRK RKSRSRKDAP KNVAETLAKW KEVNEKLESS DDGKKPVRKV  60
PAKGSKKGCM KGKGGPENGR CKYRGVRQRT WGKWVAEIRE PHRGRRLWLG TFDTAIEAAL  120
AYDEAARAMY GPCARLNLPN YPSSNESSKD DSLLPTVSQS DSTTASSLTE TTNIPKIKFE  180
DRESESRSDG PRSVFYEAGT PSSSVKEEVK DEAKGVLDER GIVEIKEEPV AFDYGTMTSG  240
QDNVDNFCWD DEMFDVDELL GVLDSTPLDT SAPNQVSGSV PVNQYAHDSS YRLQSAAYDN  300
NQFSNPSSQL QNTDDKDLQQ MQQLAPIVDD YNFDFLKPGR QEDFNFSLDD LSFLDFQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1772140573Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11722TRKRKS
22027RKSRSRKD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755171e-124HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
GenBankHQ6989021e-124HQ698902.1 Solanum lycopersicum DREB2 (DREB2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009594350.10.0PREDICTED: dehydration-responsive element-binding protein 2A-like
TrEMBLA0A1S3ZB330.0A0A1S3ZB33_TOBAC; dehydration-responsive element-binding protein 2A-like
STRINGXP_009594350.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37012445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.11e-41DRE-binding protein 2A