PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009594163.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Trihelix
Protein Properties Length: 652aa    MW: 71796.4 Da    PI: 7.0792
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009594163.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix92.93.3e-2964147186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     rW++qe+laL+++r+em+  +r+++lk+plWeevs+k+++ g++rs+k+Ckek+en+ k+++++k+g+ ++   + +t+++fdql 
  XP_009594163.1  64 RWPRQETLALLRIRSEMDVVFRDSSLKGPLWEEVSRKLADLGYHRSAKKCKEKFENVYKYHRRTKDGRASK--ADGKTYRFFDQLA 147
                     8********************************************************************96..66678******96 PP

2trihelix104.11e-32461546187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW+k+e+ aLi++r++++ +++++  k+plWee+s+ mr+ g++r++k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+qlea
  XP_009594163.1 461 RWPKEEIEALIRLRTSLDLKYQDNGPKGPLWEEISAGMRKLGYNRNAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLEA 546
                     8*********************************************************************8.99***********85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.1257121IPR017877Myb-like domain
SMARTSM007170.002361123IPR001005SANT/Myb domain
CDDcd122033.18E-2563128No hitNo description
PfamPF138372.3E-1863148No hitNo description
SMARTSM007172.6E-5458520IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-4460517IPR009057Homeodomain-like
PROSITE profilePS500907.689460518IPR017877Myb-like domain
CDDcd122031.61E-29460525No hitNo description
PfamPF138371.2E-22460547No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 652 aa     Download sequence    Send to blast
MLGVSSGLMS TTSGGGGTAN ISAPPPQEAP ESGGSSEGGG GGGGDVAAAG GFSEEGERNS  60
GGNRWPRQET LALLRIRSEM DVVFRDSSLK GPLWEEVSRK LADLGYHRSA KKCKEKFENV  120
YKYHRRTKDG RASKADGKTY RFFDQLAAFE NSPSHNSLPP PPLAATPLTM AMPMRTNSST  180
NLPIPMSQTT APPTQNTFTV SQNNVVTAAA PTVNHPLNVP SLPLSQPPPL PSTQPIITTV  240
NQINRPQGNT SSLLSNSTSS SSTSSDEDIQ KQHGKKRKWK DFFERLTKDV IEKQEELQKK  300
FLETLEKRER ERMVREETLR LQEMTRMNRE HDLLVQERSM AAAKDATIIA FLQKITEQKN  360
TPIPNITNDS LAQIQFQLSE KSPSVPPHSQ PQKQTQQLAP PATAPVPAPA PTPAPTIAVS  420
IPMTIHAQVQ TQAPSLPVVK TFEAPKPDNG GENFSPASSS RWPKEEIEAL IRLRTSLDLK  480
YQDNGPKGPL WEEISAGMRK LGYNRNAKRC KEKWENINKY FKKVKESNKK RPEDSKTCPY  540
FHQLEALYKE KAKNEVVPNT GTGFGLKPEN NNTMVPIMAE PEQQWPFPSN QPQQQGMTNI  600
IQDHDNESDS MEEDDYDDDE DEGNAYEIVT NKQPSSMAAA TATTAAAATT AV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1269277QKQHGKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009594163.10.0PREDICTED: trihelix transcription factor GT-2-like
TrEMBLA0A1S4DN330.0A0A1S4DN33_TOBAC; trihelix transcription factor GT-2-like
STRINGXP_009594163.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24022459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.17e-62Trihelix family protein