PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009594163.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | Trihelix | ||||||||
Protein Properties | Length: 652aa MW: 71796.4 Da PI: 7.0792 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 92.9 | 3.3e-29 | 64 | 147 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW++qe+laL+++r+em+ +r+++lk+plWeevs+k+++ g++rs+k+Ckek+en+ k+++++k+g+ ++ + +t+++fdql XP_009594163.1 64 RWPRQETLALLRIRSEMDVVFRDSSLKGPLWEEVSRKLADLGYHRSAKKCKEKFENVYKYHRRTKDGRASK--ADGKTYRFFDQLA 147 8********************************************************************96..66678******96 PP | |||||||
2 | trihelix | 104.1 | 1e-32 | 461 | 546 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k+e+ aLi++r++++ +++++ k+plWee+s+ mr+ g++r++k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+qlea XP_009594163.1 461 RWPKEEIEALIRLRTSLDLKYQDNGPKGPLWEEISAGMRKLGYNRNAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLEA 546 8*********************************************************************8.99***********85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.12 | 57 | 121 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.0023 | 61 | 123 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 3.18E-25 | 63 | 128 | No hit | No description |
Pfam | PF13837 | 2.3E-18 | 63 | 148 | No hit | No description |
SMART | SM00717 | 2.6E-5 | 458 | 520 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-4 | 460 | 517 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.689 | 460 | 518 | IPR017877 | Myb-like domain |
CDD | cd12203 | 1.61E-29 | 460 | 525 | No hit | No description |
Pfam | PF13837 | 1.2E-22 | 460 | 547 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 652 aa Download sequence Send to blast |
MLGVSSGLMS TTSGGGGTAN ISAPPPQEAP ESGGSSEGGG GGGGDVAAAG GFSEEGERNS 60 GGNRWPRQET LALLRIRSEM DVVFRDSSLK GPLWEEVSRK LADLGYHRSA KKCKEKFENV 120 YKYHRRTKDG RASKADGKTY RFFDQLAAFE NSPSHNSLPP PPLAATPLTM AMPMRTNSST 180 NLPIPMSQTT APPTQNTFTV SQNNVVTAAA PTVNHPLNVP SLPLSQPPPL PSTQPIITTV 240 NQINRPQGNT SSLLSNSTSS SSTSSDEDIQ KQHGKKRKWK DFFERLTKDV IEKQEELQKK 300 FLETLEKRER ERMVREETLR LQEMTRMNRE HDLLVQERSM AAAKDATIIA FLQKITEQKN 360 TPIPNITNDS LAQIQFQLSE KSPSVPPHSQ PQKQTQQLAP PATAPVPAPA PTPAPTIAVS 420 IPMTIHAQVQ TQAPSLPVVK TFEAPKPDNG GENFSPASSS RWPKEEIEAL IRLRTSLDLK 480 YQDNGPKGPL WEEISAGMRK LGYNRNAKRC KEKWENINKY FKKVKESNKK RPEDSKTCPY 540 FHQLEALYKE KAKNEVVPNT GTGFGLKPEN NNTMVPIMAE PEQQWPFPSN QPQQQGMTNI 600 IQDHDNESDS MEEDDYDDDE DEGNAYEIVT NKQPSSMAAA TATTAAAATT AV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 269 | 277 | QKQHGKKRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009594163.1 | 0.0 | PREDICTED: trihelix transcription factor GT-2-like | ||||
TrEMBL | A0A1S4DN33 | 0.0 | A0A1S4DN33_TOBAC; trihelix transcription factor GT-2-like | ||||
STRING | XP_009594163.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2402 | 24 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76880.1 | 7e-62 | Trihelix family protein |