PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009592908.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | Trihelix | ||||||||
Protein Properties | Length: 339aa MW: 37953 Da PI: 9.4826 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 59.5 | 8.3e-19 | 36 | 129 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergf..erspkqCkekwenlnkrykkikegekk....rtsessstcpyfdqle 86 +W+++e+ aLi+a+r+++ +l+rg+l++++W+ev++ + r g+ ++++qC++k+e+l+kry+ + +++ r+ + s +++f++++ XP_009592908.1 36 CWSHDETIALIDAYRDKWYSLSRGNLRANHWQEVADDVaaRCPGVdpPKTAVQCRHKMEKLRKRYRTEIQRAAPyggvRSHRYCSAWVLFKRMD 129 8************************************976555665589*****************9988876411113455556777777776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.2E-20 | 35 | 131 | No hit | No description |
PROSITE profile | PS50090 | 6.144 | 37 | 97 | IPR017877 | Myb-like domain |
SMART | SM00595 | 5.1E-10 | 44 | 136 | IPR006578 | MADF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence Send to blast |
MATLSSSTQH FSNSQSELPS ANVTVAVSSR RLPPPCWSHD ETIALIDAYR DKWYSLSRGN 60 LRANHWQEVA DDVAARCPGV DPPKTAVQCR HKMEKLRKRY RTEIQRAAPY GGVRSHRYCS 120 AWVLFKRMDA MERGPNAVSS DEEADEDVED YRQNSVKLIG DLYGNNNVNT SNNRSSSSFQ 180 GVVSNGGGGF RIRIPGMPGA APPMAKPYSR MEDSGVENPS NFGPNNFGPG KTFRGDGFVK 240 KADMGKRVAG EGVGPVREKK KEDLMGEMVA AIKVLGDGFV RMERMKMDMA RELEEMRMEM 300 EMKRTQMILE SQQRIVEAFA QALSEKNHKK PKRMPAHEC |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009592908.1 | 0.0 | PREDICTED: trihelix transcription factor ASIL2 | ||||
TrEMBL | A0A1S4AXS0 | 0.0 | A0A1S4AXS0_TOBAC; trihelix transcription factor ASIL2-like | ||||
STRING | XP_009592908.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8028 | 23 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44730.1 | 6e-50 | Trihelix family protein |