PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009592767.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ARF | ||||||||
Protein Properties | Length: 669aa MW: 75003.9 Da PI: 6.818 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 76.8 | 2.4e-24 | 129 | 229 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+kvlt sd++++g +++ +k+a+e+ +++++ +++l+ +d++g +W +k+i+r++++r++lt+GW+ Fv++++L +gD++vF + ++ XP_009592767.1 129 FCKVLTASDTSTHGGFSVLRKHANEClppldMNQQTPTQELIAKDLHGTEWHFKHIFRGQPRRHLLTTGWSTFVSSKRLVAGDSFVFLR--GGNG 221 99****************************9555555679************************************************4..3788 PP ..EEEEE- CS B3 91 elvvkvfr 98 el+v+v+r XP_009592767.1 222 ELRVGVRR 229 99****98 PP | |||||||
2 | Auxin_resp | 99.5 | 4.5e-33 | 255 | 334 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t++ F v+Y+Pr+ s+F++ ++k+++++k+ +svGmRfkm+fe+e+s+err++Gt+vg++dl++ +W++S WrsLk XP_009592767.1 255 ASHAVTTQTLFVVYYKPRT--SQFIIGLNKYLETVKHGYSVGMRFKMQFEGEESPERRFTGTIVGIEDLSS-QWKDSTWRSLK 334 689***************6..9**********************************************777.*********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 8.63E-41 | 120 | 258 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.4E-43 | 122 | 244 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.94E-22 | 127 | 229 | No hit | No description |
PROSITE profile | PS50863 | 12.464 | 129 | 231 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.6E-22 | 129 | 231 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.5E-22 | 129 | 229 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 3.3E-31 | 255 | 334 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 1.0E-11 | 555 | 648 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 2.16E-11 | 558 | 640 | No hit | No description |
PROSITE profile | PS51745 | 21.472 | 564 | 645 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 669 aa Download sequence Send to blast |
MENNGCYQSQ QQTNFSVKGK DDLYQELWKL CAGPLVDVPK YGERVYYFPQ GHMEQLEASM 60 NQELNLRIPS FNLKPKILCR VIHTQLLAEQ DTDEVYAQIT LMPEAAEQAE PTSQDPCPPE 120 PQRPKVHSFC KVLTASDTST HGGFSVLRKH ANECLPPLDM NQQTPTQELI AKDLHGTEWH 180 FKHIFRGQPR RHLLTTGWST FVSSKRLVAG DSFVFLRGGN GELRVGVRRL ARQQSSMPSS 240 VISSQSMHLG VLATASHAVT TQTLFVVYYK PRTSQFIIGL NKYLETVKHG YSVGMRFKMQ 300 FEGEESPERR FTGTIVGIED LSSQWKDSTW RSLKVQWDEP ASISRPDRVS PWEIEPFVVS 360 VPNPLVPPMA GKNKRHRPHS EAKISEPASS IASAVWNPST DSPQFNTTGI NSSTNCMLTS 420 HTDSLCGWRL PHLHTSSSML VDETEDTKSA SAWSGFPSVL SSQFSKGTNQ PILSPTDERK 480 CDTITTCRLF GIDLKSTLIS TTEAPLPKPA NISNVSAERA SPNTVPAFDS DQNSDLSIDF 540 KDQKQGQLQL LLKEVQSKQN CSTRSRTKVQ MQGVAVGRAV DLTALKGYNE LIKELEEMFE 600 IQGELHPRNK WEMVFTDDEG DMMLMGDHPW LEFCNVVRRI FIVSSQDMKK WSAGNKVLSC 660 AADNEAIAF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-175 | 21 | 357 | 17 | 355 | Auxin response factor 1 |
4ldw_A | 1e-175 | 21 | 357 | 17 | 355 | Auxin response factor 1 |
4ldw_B | 1e-175 | 21 | 357 | 17 | 355 | Auxin response factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009592767.1 | 0.0 | PREDICTED: auxin response factor 9-like isoform X1 | ||||
Swissprot | Q9XED8 | 0.0 | ARFI_ARATH; Auxin response factor 9 | ||||
TrEMBL | A0A1U7V9N8 | 0.0 | A0A1U7V9N8_NICSY; Auxin response factor | ||||
STRING | XP_009592767.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2347 | 24 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23980.1 | 0.0 | auxin response factor 9 |