PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009591584.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 491aa MW: 56907.6 Da PI: 6.8899

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009591584.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	36.7	1.4e-11	102	180	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fY+e+A+ F v+k++s+k+ ++ + t++C + r+++ ++ + C+a++ +++++ w+v+k++++HnH+l p XP_009591584.1 102 FYKEHARLKEFPVVKRNSNKK-GGDTAKYVTYCCDRASIRKTKFTT----------KSNTCNARVAAVLDDSSCWRVSKVVHDHNHDLLP 180 9*************99998.55558999**9999987666..........6778*************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.5E-7	102	180	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.1E-26	272	363	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 491 aa Download sequence Send to blast
MDELYRSLGM TSDDSSLNKY EWADVDFHGS FNNVVHLDDD DDEEPDGEYY GEADNEEEQV 60 LGNALELCDV DREMGNEFTK EDVFVGPIFG MRFSDKDSLF AFYKEHARLK EFPVVKRNSN 120 KKGGDTAKYV TYCCDRASIR KTKFTTKSNT CNARVAAVLD DSSCWRVSKV VHDHNHDLLP 180 SISRLMAGHR SVCDSLKRDL VAHDRSGIRP SKNIRLTEVQ RGGPQNLGCT PKDCRNFILK 240 SRNFEMQKGD AQSLLNFFRK MQAAYEQFHD AIFFDMTYLV NRYNMPCATF IGINHHRQSI 300 LLGCALMSHE DIDSYKLVFR TWLEAMGNVY PDAIITDQCQ SIKLAIAEVM PNTIHRYRIR 360 HIFSKLPLYL SGVHPSKIAR GEFKSMVLDS IIVEVFERKW TKYIAMYNLH TRNWFNKLYS 420 EKEKWVHVYL DMYFGAGMLS TQRSEGMYAF FDGYITRQST LKMFVNQYEL AIRAKHEKEL 480 EAEYMSKGLS V

Sequence ? help Back to Top

Protein Sequence Length: 491 aa Download sequence Send to blast

MDELYRSLGM TSDDSSLNKY EWADVDFHGS FNNVVHLDDD DDEEPDGEYY GEADNEEEQV  60
LGNALELCDV DREMGNEFTK EDVFVGPIFG MRFSDKDSLF AFYKEHARLK EFPVVKRNSN  120
KKGGDTAKYV TYCCDRASIR KTKFTTKSNT CNARVAAVLD DSSCWRVSKV VHDHNHDLLP  180
SISRLMAGHR SVCDSLKRDL VAHDRSGIRP SKNIRLTEVQ RGGPQNLGCT PKDCRNFILK  240
SRNFEMQKGD AQSLLNFFRK MQAAYEQFHD AIFFDMTYLV NRYNMPCATF IGINHHRQSI  300
LLGCALMSHE DIDSYKLVFR TWLEAMGNVY PDAIITDQCQ SIKLAIAEVM PNTIHRYRIR  360
HIFSKLPLYL SGVHPSKIAR GEFKSMVLDS IIVEVFERKW TKYIAMYNLH TRNWFNKLYS  420
EKEKWVHVYL DMYFGAGMLS TQRSEGMYAF FDGYITRQST LKMFVNQYEL AIRAKHEKEL  480
EAEYMSKGLS V

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009591584.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A1S4D9E9	0.0	A0A1S4D9E9_TOBAC; protein FAR-RED IMPAIRED RESPONSE 1-like
STRING	XP_009591584.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1301	9	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	6e-59	FAR1 family protein