PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009591277.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GeBP
Protein Properties Length: 406aa    MW: 44603.9 Da    PI: 4.9895
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009591277.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573112.72.3e-3591193197
          DUF573   1 klfqrlwseeDeivlLqGlidfkaktgk......spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkif 89 
                     klfqrlw++eDei lLqG++d+++++g       + + d++afy+++k++ +++++k+qlveK+rrLKkK+++ ++k+ sgke++f+++hd+ +f
  XP_009591277.1  91 KLFQRLWTDEDEIELLQGFLDYTTQRGLnnsstpQHHYDTTAFYDQIKSKFQLDFNKNQLVEKLRRLKKKYRTVMSKMGSGKEFVFKSAHDHATF 185
                     579************************98766444455********************************************************* PP

          DUF573  90 elskkiWg 97 
                     e+s+kiW 
  XP_009591277.1 186 EISRKIWT 193
                     *******6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.2E-3393192IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MASLEDHHHH QPVYNDDNLD DDVDVDGDDD STSSPSLAGE VTIAVSGVGV STSDSLALYP  60
DLKRRRLDDF TIPVILPEKK PSATFDDSQR KLFQRLWTDE DEIELLQGFL DYTTQRGLNN  120
SSTPQHHYDT TAFYDQIKSK FQLDFNKNQL VEKLRRLKKK YRTVMSKMGS GKEFVFKSAH  180
DHATFEISRK IWTNVDSAVR GGANGVVGAV VLYAPPEDGG LDDDDAHVNP NPYANDLIDH  240
SPKFNLNSNP NGIDIKTPRS RKRSPAASTE AVKVEQQPYQ PSGGSTTVPL AAEPVSGVAA  300
TATATVAASM PSLIEETVRN CVSPIFKELL NSVANLNGPS RGLGFGGMGM SPIPLGFGGG  360
AMSMEMMGDE KWRKQQMLEL EVYSKRLELV QDQIKAQLEE LRSMGS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16266KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755132e-47HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009591277.10.0PREDICTED: probable transcription factor At5g28040
TrEMBLA0A1S4D1510.0A0A1S4D151_TOBAC; uncharacterized protein LOC107824825
STRINGXP_009591277.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40522445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.11e-75DNA-binding storekeeper protein-related transcriptional regulator