PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009589948.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 388aa    MW: 43268 Da    PI: 6.0516
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009589948.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.45.6e-21173222255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae Aa+a+++a++k++g
  XP_009589948.1 173 RYRGVRQRP-WGKWAAEIRDPY----KaTRVWLGTFDTAEAAARAYDEAALKFRG 222
                     7********.**********76....35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.45E-23173232No hitNo description
SMARTSM003803.6E-39173236IPR001471AP2/ERF domain
PROSITE profilePS5103225.673173230IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-33173231IPR001471AP2/ERF domain
SuperFamilySSF541715.3E-23173231IPR016177DNA-binding domain
PfamPF008474.5E-14173222IPR001471AP2/ERF domain
PRINTSPR003676.7E-12174185IPR001471AP2/ERF domain
PRINTSPR003676.7E-12196212IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MCIYKVANSR DKISNRRRHE DWDRDDNYNM LESMFSGKIN REEEMSVMVS ALTHVVAGED  60
RLNHQILTDE NGAAENNLGS GFSAVSWGVG EKRGRNEEQS GHHFLHFGSS DIRSSGGQGT  120
SIRTITSSTP TTEATFIYTS TNDNQNSSSD QSSGGDNNNN NNNNNNNSQP KRRYRGVRQR  180
PWGKWAAEIR DPYKATRVWL GTFDTAEAAA RAYDEAALKF RGSKAKLNFP ENVKLLPSPV  240
LSDSPNTLYS VSSSPDPIVH TSLYRPNFIG YPLRDDEPIV HTSQYRSNFI ERPRTDEPIL  300
HTTHHQALNS SSTDLNAQIF TNDDEFLRLH VPYFPNMFLS PVQPDASQSE LVTEALAPPP  360
SQNSGTDFQT AASNWSNSAY DHPSSSSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-23172233163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT9904896e-54CT990489.3 S.lycopersicum DNA sequence from clone LE_HBa-20F17 on chromosome 4, complete sequence.
GenBankHG9754436e-54HG975443.1 Solanum pennellii chromosome ch04, complete genome.
GenBankHG9755166e-54HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009589948.10.0PREDICTED: ethylene-responsive transcription factor ABR1-like
TrEMBLA0A1S4DFC30.0A0A1S4DFC3_TOBAC; ethylene-responsive transcription factor ABR1-like
STRINGXP_009589948.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.18e-27ethylene response factor 110