PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009589826.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 413aa    MW: 46504.9 Da    PI: 8.1148
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009589826.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.21.1e-19246294355
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     ++GVr+++ +g+WvAeIr p++   r+r++lg+f+taeeAa a++ a+  l+g
  XP_009589826.1 246 FRGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFDTAEEAAIAYDTAAYMLRG 294
                     8******9.**********955...5**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.01E-31244304No hitNo description
Gene3DG3DSA:3.30.730.103.0E-31245303IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-22245303IPR016177DNA-binding domain
PROSITE profilePS5103222.418245302IPR001471AP2/ERF domain
SMARTSM003805.5E-37245308IPR001471AP2/ERF domain
PRINTSPR003671.0E-10246257IPR001471AP2/ERF domain
PfamPF008474.5E-13246294IPR001471AP2/ERF domain
PRINTSPR003671.0E-10268284IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MENQSPKSKS LIQKELPTCY KEVAIESLSR YFKNPHILEG LNDESSITSF PNMKERLVSS  60
SDSTSSTKFS EFFPLNFLQN DQGNNNIIPL NNFLESFQHH NQVSDHQTCS SPNSLSNNYP  120
TLGLFLQEPS ILEISKRAEE SLNNKSHKTS ADIFPMSSLD ESQIHQQQQA AATTSTTNWL  180
KMNQTLTNCT TTKGFSDYWL STTKTQPMKF TTGSRKSSLH YNQGNQKSSS SSSSSSLIAT  240
SQGKLFRGVR QRHWGKWVAE IRLPRNRTRV WLGTFDTAEE AAIAYDTAAY MLRGDYAHLN  300
FPHLKNQLKA NSINGNTAAL LEAKIRAIST QTKKANEHDQ STKEVLLATD DSTLKIKNVI  360
SQNQEMENSE KKVKNINQER LLSENNIDGV QLSRMPSLDM DMIWDALLVS DSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-21241312168ATERF1
3gcc_A1e-21241312168ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009589826.10.0PREDICTED: ethylene-responsive transcription factor ERF062-like
RefseqXP_016453280.10.0PREDICTED: ethylene-responsive transcription factor ERF062-like
TrEMBLA0A1S3YMX00.0A0A1S3YMX0_TOBAC; ethylene-responsive transcription factor ERF062-like
STRINGXP_009589826.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA109211825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.15e-60ERF family protein