PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009589564.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | B3 | ||||||||
Protein Properties | Length: 909aa MW: 100558 Da PI: 7.3922 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 57.8 | 1.9e-18 | 322 | 422 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+kvl+ sd+++ grlvlpk +ae++ ++++e+ l+++d +g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ e++ XP_009589564.1 322 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLRIQDVKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRMD-PEGK 414 99**************************555567778***************9989999999***9.********************876.8888 PP .EEEEE-S CS B3 92 lvvkvfrk 99 l+++++++ XP_009589564.1 415 LLMGFRKA 422 88888765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.9E-29 | 314 | 427 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.62E-19 | 319 | 421 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.14E-22 | 320 | 421 | No hit | No description |
SMART | SM01019 | 1.9E-20 | 322 | 423 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.152 | 322 | 423 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.8E-16 | 322 | 422 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 14.054 | 586 | 636 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 1.5E-9 | 591 | 633 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010030 | Biological Process | positive regulation of seed germination | ||||
GO:2000034 | Biological Process | regulation of seed maturation | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 909 aa Download sequence Send to blast |
MDSKICMNGV CGATSSIEWK KGWPLKSGEF AYLCDKCGTA YEQLGFCDLF HSEDTGWREC 60 ISCGKRLHCG CIASSSLLEL LDSGGINCVG CARSCQLHAT PNHVKAKAFG TSNSNSVGET 120 PSTSLGSQMN GSEPKKREGS DGVDPVLVLP HQNGNTNKPI GQIKMEEAFH PAGESGCTFS 180 SNLCQASAES SKNVKLDSYN GYIGVNEIHG SQVQTNLSIA LSAPSPNTKL FPATVDEGDL 240 NKRISSLQQG SRSRSLLPKP PKSTSAVRSE TNAGIISQIR VARPPVEGRI KNQLLPRYWP 300 RITDQELQQI SGDSNSTIIP LFEKVLSASD AGRIGRLVLP KACAEAYFPP ISQPEGLPLR 360 IQDVKGKEWV FQFRFWPNNN SRMYVLEGVT PCIQSMQLQA GDTVTFSRMD PEGKLLMGFR 420 KASTVNSTQE TRLSAIPKSV FSTEPTSFSA MPENLPLMSG YSGLLQSFKG SRESSMNLSS 480 KHFNSGDFSW YLTEKNEGRN ADGTFSPSMP VSDRKRSRNI GSKSKRLLID SDEALELKLS 540 WEELQDMLRP PLSIQPTTVT IEDHEFEEYE QPPVLGKRSI FTVRFSGEQE QWAQCDNCFK 600 WRRLPADYLL PPQWTCQDNI FYHSRCSCSV PDDLTSRELE YLLKMDKDLK KRRNAAGQRT 660 AQAHDSSDLD SHANGTGVAG DVRERGATSV ATTTKHPRHR PGCSCIVCIQ PPSGKGKHNP 720 TCTCNVCLTV KRRFKTLMMR KKKRQSEREA EIVQRNQLMW SSKEETEVDS FSRQVKPEAD 780 PSDRERSGSE TLARGHSSNQ LQKLPETSKS QLDLNCHPNR EDTGSSHLSM MSLLQQASLP 840 LETYLRQNGL TSLVSEQQGS SGSQGLPPDT RESEVRIHED QCFASTSQEQ EQEGTKENSE 900 PDQSGKDNS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 4e-68 | 300 | 429 | 2 | 131 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 645 | 652 | DKDLKKRR |
2 | 730 | 741 | KRRFKTLMMRKK |
3 | 730 | 743 | KRRFKTLMMRKKKR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC254745 | 0.0 | AC254745.4 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone sle-30h11 map 10, complete sequence. | |||
GenBank | HG975522 | 0.0 | HG975522.1 Solanum lycopersicum chromosome ch10, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009589564.1 | 0.0 | PREDICTED: B3 domain-containing transcription repressor VAL2-like isoform X1 | ||||
Swissprot | Q6Z3U3 | 0.0 | Y7797_ORYSJ; B3 domain-containing protein Os07g0679700 | ||||
TrEMBL | A0A1S3X1Q9 | 0.0 | A0A1S3X1Q9_TOBAC; B3 domain-containing transcription repressor VAL2-like isoform X1 | ||||
STRING | XP_009589564.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1491 | 23 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32010.1 | 0.0 | HSI2-like 1 |
Publications ? help Back to Top | |||
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