PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009588261.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 371aa MW: 42966.7 Da PI: 9.9627

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009588261.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	39.1	2.5e-12	30	109	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY+e+A+ GF ++k++s+k+ ++ + + ++ C ++ k+++++ +++ +C+a+++ +e++g w+v+k++++ nH+l p XP_009588261.1 30 DFYKEHARLSGFCIVKRTSNKK-GSDIVRHVQYGCDRSKKPRNKH----------VTKMRNCRARINRILEENGSWRVSKVVKKYNHQLEP 109 6**************99998.66669***9987776655..........558889*************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.8E-9	30	109	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.2E-27	229	321	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence Send to blast
MEISNEFNEE DLVIGTITRM RFSNKDIMFD FYKEHARLSG FCIVKRTSNK KGSDIVRHVQ 60 YGCDRSKKPR NKHVTKMRNC RARINRILEE NGSWRVSKVV KKYNHQLEPT LSRLMAGHRS 120 LSKSLKRTIV AKDIVGLRPS KNIRVAEVLA GSPENLGCTP KDCRKYILKS RKLQLQEGDA 180 QSLLKFFSDM RQKDREFYYY VDVDSFGRLR NVVWVHSHSK VAYEEFHDVI FLDNTYLVNR 240 YNMPFASFVG VNQHRQSILL GCALMSSEDI TSYKMVLSTW LGALNNVCPL AIMTDQCDTI 300 KAAINALMPN TVYRYCIWHI FAKLPMKLSG VLDGKISKAE FKALVLDSIN VAEFERRWTD 360 YIAKYNLDGR D

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence Send to blast

MEISNEFNEE DLVIGTITRM RFSNKDIMFD FYKEHARLSG FCIVKRTSNK KGSDIVRHVQ  60
YGCDRSKKPR NKHVTKMRNC RARINRILEE NGSWRVSKVV KKYNHQLEPT LSRLMAGHRS  120
LSKSLKRTIV AKDIVGLRPS KNIRVAEVLA GSPENLGCTP KDCRKYILKS RKLQLQEGDA  180
QSLLKFFSDM RQKDREFYYY VDVDSFGRLR NVVWVHSHSK VAYEEFHDVI FLDNTYLVNR  240
YNMPFASFVG VNQHRQSILL GCALMSSEDI TSYKMVLSTW LGALNNVCPL AIMTDQCDTI  300
KAAINALMPN TVYRYCIWHI FAKLPMKLSG VLDGKISKAE FKALVLDSIN VAEFERRWTD  360
YIAKYNLDGR D

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009588261.1	0.0	PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	A0A1U7Y3U2	0.0	A0A1U7Y3U2_NICSY; protein FAR-RED IMPAIRED RESPONSE 1-like
STRING	XP_009588261.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1301	9	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	4e-51	FAR1 family protein