PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009588171.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HSF
Protein Properties Length: 320aa    MW: 35948.4 Da    PI: 5.5442
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009588171.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.41.3e-34121042103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     F+ k+y++++d++++ +i w +++nsf+v+++ +f++++Lp yFkh+nf+SFvRQLn+YgFkkv+ ++         weF++++F +g+++ll++
  XP_009588171.1  12 FVLKTYQMVNDSKIDGFIAWGRENNSFIVVEPLDFSQRILPVYFKHNNFSSFVRQLNTYGFKKVDPDK---------WEFANEWFLRGQTHLLKN 97 
                     9********************999*****************************************999.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     i r+k++
  XP_009588171.1  98 IVRRKHS 104
                     ***9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004154.2E-468101IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.63E-329101IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.0E-3510101IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.1E-2812101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.9E-161235IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.9E-165062IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405175IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.9E-166375IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MEANNSNIIA PFVLKTYQMV NDSKIDGFIA WGRENNSFIV VEPLDFSQRI LPVYFKHNNF  60
SSFVRQLNTY GFKKVDPDKW EFANEWFLRG QTHLLKNIVR RKHSRNSYSL KQDESEDEEI  120
YSEIARLKQE QKALEQEVEN MTKRLEATEK RPQQMMAFLC KVVDDPEILP RILLEKERSK  180
RVSLSNCEKK RRIMISNNST SCSSVKSEEE VGGPLVGTIS SFRSPDANFD KDTLCQSSPS  240
LETPSTAWLG GRPMITYETY RSCPAMSSSL SSGSSESGGF TAALSSEAFP GYDYAGGGGT  300
VGTEEVSPPP YPFSLLGGGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-21310121129Heat shock factor protein 1
5d5v_B5e-21310121129Heat shock factor protein 1
5d5v_D5e-21310121129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00379DAPTransfer from AT3G24520Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755248e-53HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009588171.10.0PREDICTED: heat stress transcription factor C-1
RefseqXP_016512646.10.0PREDICTED: heat stress transcription factor C-1-like
SwissprotQ9LV527e-88HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBLA0A1S4DH190.0A0A1S4DH19_TOBAC; heat stress transcription factor C-1-like
STRINGXP_009588171.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68322333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.14e-83heat shock transcription factor C1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]