PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009149879.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 93aa MW: 10475.8 Da PI: 9.364 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 22.6 | 1.9e-07 | 20 | 62 | 14 | 54 |
HHHHHHHHHHHCTSCCC.....TTS-STCHHHHHHHHHHHHHH CS HLH 14 driNsafeeLrellPkas..kapskKlsKaeiLekAveYIksL 54 d+iN+ +L +llP++ + +s+K+s + +L++++ YI++L XP_009149879.1 20 DQINDLVLQLHRLLPELGnnNRRSGKVSASKVLQETCTYIRNL 62 79**************666899*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 9.763 | 6 | 62 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.2E-8 | 20 | 84 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.7E-5 | 20 | 62 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.09E-8 | 20 | 80 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009640 | Biological Process | photomorphogenesis | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 93 aa Download sequence Send to blast |
MSSRRSRSSR QTGTSMISED QINDLVLQLH RLLPELGNNN RRSGKVSASK VLQETCTYIR 60 NLNKEVDDLS ERLSQLLEST DSAQAALIRS LLM |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, leaves, stems and flowers. {ECO:0000269|PubMed:16527868}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Atypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. Regulates light responses by binding and inhibiting the activity of the bHLH transcription factor HFR1, a critical regulator of light signaling and shade avoidance. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868, ECO:0000269|PubMed:20305124}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009149879.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by exogenous gibberellin. {ECO:0000269|PubMed:16527868}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL049746 | 2e-56 | AL049746.1 Arabidopsis thaliana DNA chromosome 3, BAC clone T23J7. | |||
GenBank | CP002686 | 2e-56 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009149879.1 | 1e-59 | PREDICTED: transcription factor PRE4 | ||||
Swissprot | F4JCN9 | 4e-50 | PRE4_ARATH; Transcription factor PRE4 | ||||
TrEMBL | A0A078HHS2 | 2e-58 | A0A078HHS2_BRANA; BnaA06g17190D protein | ||||
TrEMBL | A0A397Z5I0 | 2e-58 | A0A397Z5I0_BRACM; Uncharacterized protein | ||||
TrEMBL | M4DNN0 | 2e-58 | M4DNN0_BRARP; Uncharacterized protein | ||||
STRING | Bra018117.1-P | 4e-59 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM259 | 28 | 225 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47710.1 | 1e-48 | BANQUO 3 |
Publications ? help Back to Top | |||
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