PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009149732.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 463aa    MW: 51141.5 Da    PI: 6.0307
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009149732.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.57.8e-51161441128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     lp+G+rF+Ptdeelv +yL++k++g++ ++ ++i+e+di+k+ePwdLp  + +k++++ew fF++ d+ky++g+r+nrat +gyWkatgkd++++
  XP_009149732.1  16 LPVGLRFRPTDEELVRFYLHRKINGHDDDV-TAIREIDICKWEPWDLPgfSVIKTNDSEWLFFCPLDRKYPNGSRQNRATIAGYWKATGKDRKIK 109
                     799************************999.88***************6448888999************************************* PP

             NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     s k++ +g+k+tLvf++grapkg++t+W+mheyr+
  XP_009149732.1 110 SGKNSIIGVKRTLVFHSGRAPKGTRTNWIMHEYRA 144
                     *99999***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.45E-5713167IPR003441NAC domain
PROSITE profilePS5100554.65116167IPR003441NAC domain
PfamPF023651.1E-2417143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009814Biological Processdefense response, incompatible interaction
GO:0010200Biological Processresponse to chitin
GO:0070417Biological Processcellular response to cold
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MASTNQNIKV LTLDSLPVGL RFRPTDEELV RFYLHRKING HDDDVTAIRE IDICKWEPWD  60
LPGFSVIKTN DSEWLFFCPL DRKYPNGSRQ NRATIAGYWK ATGKDRKIKS GKNSIIGVKR  120
TLVFHSGRAP KGTRTNWIMH EYRATEDDLS GTNPGQSPFV ICKLFKKQDL SLADEDSKLD  180
EAADQDVLSP TGATSSPGET RSQVSVVVKT EDVKHYDIAE SSLVVSSACV EATTAQLGDI  240
DYLSFPELES LNYTMFSPSH SQLQSELGFS LNAFQSGLSD FSGNHSNSSQ VQTQYGTNEV  300
DTYISDFVDS ILDLPDDAVP EQEGSAPHQI AYAQHSVGDM SNDVSRTGII KLQARREQPS  360
GCATDYIVHG SASKRLRLQS NLEGIKSKSL ELQTIKREVE EDMDGEAMKK GKPSKNKTGL  420
LFRKFVSVRC SSGGLLRAAV VAILFLMSVC SLTADFRAAS VMI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A8e-48616810169NAC domain-containing protein 19
3swm_B8e-48616810169NAC domain-containing protein 19
3swm_C8e-48616810169NAC domain-containing protein 19
3swm_D8e-48616810169NAC domain-containing protein 19
3swp_A8e-48616810169NAC domain-containing protein 19
3swp_B8e-48616810169NAC domain-containing protein 19
3swp_C8e-48616810169NAC domain-containing protein 19
3swp_D8e-48616810169NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.85440.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, rosette leaves, cauline leaves and stems. {ECO:0000269|PubMed:17158162}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (PubMed:20156199, PubMed:19947982). Transcriptional activator involved in response to cold stress. Mediates induction of pathogenesis-related (PR) genes independently of salicylic signaling in response to cold. Binds directly to the PR gene promoters and enhances plant resistance to pathogen infection, incorporating cold signals into pathogen resistance responses (PubMed:19947982). Plays a regulatory role in abscisic acid (ABA)-mediated drought-resistance response (PubMed:22967043). {ECO:0000269|PubMed:19947982, ECO:0000269|PubMed:20156199, ECO:0000269|PubMed:22967043}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00398DAPTransfer from AT3G49530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009149732.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt, drought stress, abscisic acid (ABA), salicylic acid (SA) and methyl methanesulfonate (MMS) treatment. {ECO:0000269|PubMed:17158162}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6413530.0KP641353.1 Brassica napus NAC transcription factor 62-1.1 (NAC62-1.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009149732.10.0PREDICTED: NAC domain-containing protein 62
SwissprotQ9SCK60.0NAC62_ARATH; NAC domain-containing protein 62
TrEMBLA0A3P5YGM10.0A0A3P5YGM1_BRACM; Uncharacterized protein
TrEMBLM4DN930.0M4DN93_BRARP; Uncharacterized protein
STRINGBra017980.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24162873
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49530.10.0NAC domain containing protein 62
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]