PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009145131.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 243aa    MW: 26850.8 Da    PI: 4.9322
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009145131.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.51.5e-10177222655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR ri +++ +L+el+P+     +k  + a++L +A +Y+k L+
  XP_009145131.1 177 SIAERVRRTRISDRIRRLQELVPNM----DKQTNTADMLDEALQYVKALE 222
                     689*********************7....688***************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.284171221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-15174238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.75E-10175226No hitNo description
Gene3DG3DSA:4.10.280.106.7E-15176236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.1E-11177227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-7177222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MQSTDNGGGK GGGGEVSRGG LSRIRSAPAN WIETLLQDDE EDDLKPDLCL TELLTGNSSG  60
ITSRDLFEFP SAVEQGLYTN QGGFHRQNSS PANFLGGSAA GSDGFFSNFG IPANYDYLPP  120
PNDDISPASK RSREFSSQLK EEQMSGGVSG MMEDKLLEDS VPFRVRAKRG CATHPRSIAE  180
RVRRTRISDR IRRLQELVPN MDKQTNTADM LDEALQYVKA LESQIQELTE QQKRCRCKPK  240
EEN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1713GGKGGGG
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009145131.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4117912e-89AF411791.1 Arabidopsis thaliana At1g35460/F12A4_2 mRNA, complete cds.
GenBankAF4886122e-89AF488612.1 Arabidopsis thaliana clone bHLH080 putative bHLH transcription factor mRNA, complete cds.
GenBankAY0937942e-89AY093794.1 Arabidopsis thaliana At1g35460/F12A4_2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009145131.10.0PREDICTED: transcription factor bHLH80-like
RefseqXP_009145132.10.0PREDICTED: transcription factor bHLH80-like
RefseqXP_013749259.10.0transcription factor bHLH80
RefseqXP_018514820.10.0PREDICTED: transcription factor bHLH80-like
RefseqXP_022575219.10.0transcription factor bHLH80
SwissprotQ9C8P81e-120BH080_ARATH; Transcription factor bHLH80
TrEMBLA0A078GPB61e-179A0A078GPB6_BRANA; BnaA05g18250D protein
TrEMBLA0A397ZBJ41e-179A0A397ZBJ4_BRACM; Uncharacterized protein
TrEMBLM4F0281e-179M4F028_BRARP; Uncharacterized protein
STRINGBra034421.1-P1e-180(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51042551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.11e-89bHLH family protein