PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009143738.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 79aa    MW: 9167.06 Da    PI: 8.959
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009143738.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.96.1e-101155345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     +WT  E +l+ +a + +  +   +W+ +ar +g g+++++++ ++ 
   XP_009143738.1 11 SWTRKENKLFERALAIYEQDtpdRWHNVARAVG-GKSAEEVRRHYE 55
                     7******************9*************.**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129311.566762IPR017884SANT domain
SMARTSM007171.6E-9860IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.6E-61064IPR009057Homeodomain-like
SuperFamilySSF466891.2E-131165IPR009057Homeodomain-like
PfamPF002492.6E-81155IPR001005SANT/Myb domain
CDDcd001676.38E-81158No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 79 aa     Download sequence    Send to blast
MASNSMSSNT SWTRKENKLF ERALAIYEQD TPDRWHNVAR AVGGKSAEEV RRHYELLVRD  60
VNDIESGRYP HPTYRSNGN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-29178177RADIALIS
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed just outside the vascular bundles in the rosette stem and the leaf traces. Not detected in floral primordia. {ECO:0000269|PubMed:17672842}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009143738.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893731e-131AC189373.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB048F07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009143738.12e-53PREDICTED: protein RADIALIS-like 3
RefseqXP_013740043.12e-53protein RADIALIS-like 3
SwissprotQ6NNN08e-44RADL3_ARATH; Protein RADIALIS-like 3
TrEMBLA0A078JFW44e-52A0A078JFW4_BRANA; BnaA01g34510D protein
TrEMBLA0A398APM94e-52A0A398APM9_BRACM; Uncharacterized protein
TrEMBLM4D5D44e-52M4D5D4_BRARP; Uncharacterized protein
STRINGBra011691.1-P7e-53(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.23e-36RAD-like 6