PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009143737.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 285aa MW: 33049.5 Da PI: 4.4948 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 22.4 | 2.3e-07 | 162 | 206 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ r RR+ri ++ +eL +l+P +Kl+ ae+ + A +Y+k Lq XP_009143737.1 162 SIAARERRRRIAEKTHELTKLIPGG-----QKLNTAEMFQAAAKYVKFLQ 206 567899*****************86.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.09E-10 | 148 | 216 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.335 | 156 | 205 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.3E-10 | 160 | 217 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.8E-5 | 162 | 206 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.9E-8 | 162 | 211 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.78E-4 | 178 | 209 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 285 aa Download sequence Send to blast |
MDCLSHFFDW DQPIQLQDCF IPDVDITILE TDNFFFQSQP QLQFQQPLFQ EEAPLELTDL 60 DYFCDQFLPP QETCLPYPKS EIFNETHDLD SFLPAPKLQK LVNSSYHCNP NFFNYYQELD 120 LAPEPSIFPE FRVPDFPLEF KVDRGDEDRS HGTKKPTLSS QSIAARERRR RIAEKTHELT 180 KLIPGGQKLN TAEMFQAAAK YVKFLQSQVG ILQMMQTAKK THTSDVEIET RVLLGSQAIQ 240 EKLSTDEVCL VPCEMVRDLA SEESIWRNPM IFREINKLLS TNLAN |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009143737.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009143737.1 | 0.0 | PREDICTED: transcription factor bHLH53 | ||||
Refseq | XP_022570536.1 | 0.0 | transcription factor bHLH53-like | ||||
Swissprot | Q84RD0 | 1e-133 | BH053_ARATH; Transcription factor bHLH53 | ||||
TrEMBL | A0A397ZC29 | 0.0 | A0A397ZC29_BRACM; Uncharacterized protein | ||||
TrEMBL | M4CMF1 | 0.0 | M4CMF1_BRARP; Uncharacterized protein | ||||
STRING | Bra005389.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4547 | 25 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34820.1 | 1e-119 | bHLH family protein |
Publications ? help Back to Top | |||
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