PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009142834.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | VOZ | ||||||||
Protein Properties | Length: 474aa MW: 52698.8 Da PI: 5.7255 | ||||||||
Description | VOZ family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | VOZ | 411.3 | 1.7e-126 | 222 | 436 | 1 | 215 |
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaael 95 pppsaflgpkcalwdctrpa+gs+w+ dycs +h +lal e++pgt+pvlrp+gi+lkd+ll++al+ak+ gk+vg p+cega+++k+pwnaael XP_009142834.1 222 PPPSAFLGPKCALWDCTRPAHGSDWYMDYCSDYHGNLALTEDSPGTAPVLRPGGISLKDNLLIDALRAKTLGKNVGSPVCEGAVNTKCPWNAAEL 316 89********************************************************************************************* PP VOZ 96 fdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrlelklv 190 f+l+l+egetirewlffdkprra++sgnrkqrslpdysgrgwhesrkq+mke++g+krsyymdpqp++ fewhl+ey+ine+da+alyrlelkl+ XP_009142834.1 317 FHLELVEGETIREWLFFDKPRRAYDSGNRKQRSLPDYSGRGWHESRKQLMKEQEGQKRSYYMDPQPPGPFEWHLFEYQINESDACALYRLELKLT 411 *********************************************************************************************** PP VOZ 191 dekksakgkvskdsladlqkklgrl 215 ++kks+kgkv+kd+ladl+kk+ ++ XP_009142834.1 412 NGKKSPKGKVAKDPLADLEKKMEKM 436 ********************99876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 474 aa Download sequence Send to blast |
MSNHPKITCV SSSHQNLVEK LMQLQERFSH LQAARKEGRV NDHAVLEAQI SQNLREWQAE 60 LSAPSPESSL LGGSISQFSE EIARLLKLND EEDDATSSFK EHNVPKADAF DQGLCSPGQL 120 EWAAEPFDQS SFDVNFLSGF EDAVNNSGTH DHQLHCAFQE FDPSLSTAPD FHGQKLSHLD 180 ITSQLDYHLS EVRQEFNNGT PSVKLDVPDE SEFTTPPSVR VPPPSAFLGP KCALWDCTRP 240 AHGSDWYMDY CSDYHGNLAL TEDSPGTAPV LRPGGISLKD NLLIDALRAK TLGKNVGSPV 300 CEGAVNTKCP WNAAELFHLE LVEGETIREW LFFDKPRRAY DSGNRKQRSL PDYSGRGWHE 360 SRKQLMKEQE GQKRSYYMDP QPPGPFEWHL FEYQINESDA CALYRLELKL TNGKKSPKGK 420 VAKDPLADLE KKMEKMGKLT PEAASDKPSP TTKGRAKSTK GAKAAATGNL TQAT |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bra.24595 | 0.0 | silique |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. Expressed in the vascular bundles and mesophyll cells of various tissues. Expressed in the root, especially in the root tip. Also detected in stamen filaments, stipules and anthers. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ1 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Binds as a dimer to the palindromic sequence 5'-GCGTNNNNNNNACGC-3'. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009142834.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By far-red light. Down-regulated by far-red light (at protein level). {ECO:0000269|PubMed:22904146}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC155337 | 0.0 | AC155337.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH117N09, complete sequence. | |||
GenBank | AC189220 | 0.0 | AC189220.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB010H06, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009142834.1 | 0.0 | PREDICTED: transcription factor VOZ2 | ||||
Swissprot | Q9SLB9 | 0.0 | VOZ2_ARATH; Transcription factor VOZ2 | ||||
TrEMBL | A0A397Z661 | 0.0 | A0A397Z661_BRACM; Uncharacterized protein | ||||
STRING | Bra004691.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11060 | 25 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42400.1 | 0.0 | vascular plant one zinc finger protein 2 |
Publications ? help Back to Top | |||
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