PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009142832.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bZIP | ||||||||
Protein Properties | Length: 306aa MW: 34405.8 Da PI: 7.0128 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 33.2 | 1.1e-10 | 174 | 217 | 5 | 48 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 kr +r NR +A+rsR RK+++i eLe+ v +L+ae + L + XP_009142832.1 174 KRVKRILANRQSAQRSRVRKLQYITELERSVTSLQAEVSVLSPR 217 8999********************************98877655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.1E-12 | 170 | 234 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.588 | 172 | 235 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 7.0E-13 | 174 | 225 | No hit | No description |
SuperFamily | SSF57959 | 4.36E-11 | 174 | 228 | No hit | No description |
Pfam | PF00170 | 3.4E-9 | 174 | 217 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14703 | 4.89E-23 | 175 | 225 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 177 | 192 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MAQLPPKIPN MTPHWPDFSS QNLTATASTA VQNPSWVDEF LDFSACRRGN HRRSISDSIA 60 FLEAPFVRGH GSTQNNHFDK FDDEQFMSMF KDDNDLHNNP SHNNNNAGTT GSSSNTSTLS 120 DHNSFNGDKE PPSDHNMKHK NDEVHSQCKT EPEDGTASNN NSGDSSVTRI LDPKRVKRIL 180 ANRQSAQRSR VRKLQYITEL ERSVTSLQAE VSVLSPRVAF LDHQRLLLNV DNSSLKQRIA 240 ALAQDKIFKD AHQEALKREI ERLREVYQQQ SLKKMENGNH SQATGTGANS AVDIKPSNEK 300 EELFNV |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in vascular tissues of leaves, stems and siliques, anthers, filaments, tapetum, mature pollen grains, pistil vascular tissues and papillar cells, and funiculi. {ECO:0000269|PubMed:19449183}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator involved in the sporophytic control of cell wall patterning and gametophytic control of pollen development. May play a role in the control of metabolic pathways regulating cellular transport and lipid metabolism. {ECO:0000269|PubMed:17719007, ECO:0000269|PubMed:19449183}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009142832.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC155337 | 0.0 | AC155337.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH117N09, complete sequence. | |||
GenBank | AC189220 | 0.0 | AC189220.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB010H06, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009142832.1 | 0.0 | PREDICTED: basic leucine zipper 34 | ||||
Swissprot | F4IN23 | 1e-153 | BZP34_ARATH; Basic leucine zipper 34 | ||||
TrEMBL | M4CKF4 | 0.0 | M4CKF4_BRARP; Uncharacterized protein | ||||
STRING | Bra004689.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1753 | 27 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42380.2 | 1e-142 | bZIP family protein |
Publications ? help Back to Top | |||
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