PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009141468.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 182aa    MW: 20762.6 Da    PI: 5.5666
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009141468.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF62.25.9e-201257449
                    -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    ++   rqvtfskRr+g++KKA+EL +LC+ae  +++fs+ gk y y
  XP_009141468.1 12 QDMNTRQVTFSKRRTGLFKKASELATLCNAELGIVVFSPGGKPYSY 57
                    56778*************************************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006625.315161IPR002100Transcription factor, MADS-box
SMARTSM004322.5E-32160IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.19E-26172IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-19323IPR002100Transcription factor, MADS-box
PfamPF003191.2E-231257IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-192338IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-193859IPR002100Transcription factor, MADS-box
Gene3DG3DSA:1.10.601.108.3E-469162No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MGRKKIKMEM VQDMNTRQVT FSKRRTGLFK KASELATLCN AELGIVVFSP GGKPYSYGKP  60
NLDAVTERFM RECDDDSDSG DDEEEEEERG KSRPKMKKVN ERLDCLKREI EAEKKRGEER  120
QAKLESAGDE RFEKPIEKLT IDELKEYMDK LEAVHGRIQG QANKMQASSC LVFLSGDKAS  180
VE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-15190195MEF2 CHIMERA
6byy_B1e-15190195MEF2 CHIMERA
6byy_C1e-15190195MEF2 CHIMERA
6byy_D1e-15190195MEF2 CHIMERA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: During embryogenesis, expressed in the chalazal endosperm. {ECO:0000269|PubMed:20631316}.
UniprotTISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269|PubMed:12949148}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009141468.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009141468.11e-130PREDICTED: agamous-like MADS-box protein AGL29
SwissprotO647035e-93AGL29_ARATH; Agamous-like MADS-box protein AGL29
TrEMBLM4DZG31e-129M4DZG3_BRARP; Uncharacterized protein
STRINGBra021910.1-P1e-130(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.18e-89AGAMOUS-like 29
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]