PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009141403.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 290aa    MW: 33207.6 Da    PI: 4.6393
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009141403.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.45.3e-08166210655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++ r RR+ri ++ +eL +l+P       +Kl+ ae+ + A +Y+k Lq
  XP_009141403.1 166 SIAARERRRRIADKTQELTKLIPGG-----QKLNTAEMFQAAAKYVKFLQ 210
                     567899*****************86.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.18E-10159220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.309160209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-10163220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-5166210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-8166215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.22E-4181213No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MSSMDCLSHF FNWDQPIQLQ DCFIPDMDMI IPETDSFYFQ SQPQMQFDRP LFQEEAPSQS  60
LLELTHFDAF CDQLLPPQEI FLPYPKAETF DESHNMDSFL PTSKRQKLFN SSYHCNTHNH  120
FPSPNLEYVP EASIFPEFMV PDFPLAFEAG RGDQDGTKRP TLSSQSIAAR ERRRRIADKT  180
QELTKLIPGG QKLNTAEMFQ AAAKYVKFLQ SQVGILQMMQ TTKKRQGISD AEIETKVLLG  240
SQAIQEKLST EEVCLVPCEM VRELTSEESS WRNPKISGEI TKLLSTDLAN
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009141403.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1896550.0AC189655.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS012M03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013747277.20.0transcription factor bHLH53
SwissprotQ84RD01e-140BH053_ARATH; Transcription factor bHLH53
TrEMBLM4DZI60.0M4DZI6_BRARP; Uncharacterized protein
STRINGBra021933.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45472552
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34820.11e-141bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]