PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009136844.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 279aa    MW: 31266.2 Da    PI: 7.9442
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009136844.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox603.7e-19133187256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ +++k+q  +Le+ F+++++++ +++  LAkklgLt rqV vWFqNrRa+ k
  XP_009136844.1 133 RKKLRLSKDQSAVLEDTFKEHNTLNPKQKLALAKKLGLTARQVEVWFQNRRARTK 187
                     677889***********************************************98 PP
2HD-ZIP_I/II121.93.2e-39133222191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     +kk+rlsk+q+++LE++F+e+++L+p++K +la++Lgl++rqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een rLeke +eLr +l
  XP_009136844.1 133 RKKLRLSKDQSAVLEDTFKEHNTLNPKQKLALAKKLGLTARQVEVWFQNRRARTKLKQTEVDCEYLKRCVEKLTEENIRLEKEAAELR-AL 222
                     69*************************************************************************************9.54 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046184.3E-25297IPR006712HD-ZIP protein, N-terminal
PROSITE profilePS5007117.135129189IPR001356Homeobox domain
SMARTSM003891.9E-17131193IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.2E-18133187IPR009057Homeodomain-like
SuperFamilySSF466891.75E-18133198IPR009057Homeodomain-like
PfamPF000461.5E-16133187IPR001356Homeobox domain
CDDcd000862.84E-16133190No hitNo description
PRINTSPR000317.3E-6160169IPR000047Helix-turn-helix motif
PROSITE patternPS000270164187IPR017970Homeobox, conserved site
PRINTSPR000317.3E-6169185IPR000047Helix-turn-helix motif
PfamPF021834.2E-7189223IPR003106Leucine zipper, homeobox-associated
SMARTSM003403.8E-23189232IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MMMGKEDLSL SLSLGFAQTH HPHKLMNLKP TSSPISNLQM FPWNQTFVSS SDHQSQQLFT  60
KINVNSLPVD LEEETGVSSP NSTISSNVSG KRRSEREGTS GGAGDDLDVT LDRSSSRGTS  120
EEEEEEYGGE ACRKKLRLSK DQSAVLEDTF KEHNTLNPKQ KLALAKKLGL TARQVEVWFQ  180
NRRARTKLKQ TEVDCEYLKR CVEKLTEENI RLEKEAAELR ALKLSPRLYG HMSPPTTLLM  240
CPSCERVAGP SNHNQRSVSL SPWLQMAHGS TFDVVHPRS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1181189RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009136844.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009136844.10.0PREDICTED: homeobox-leucine zipper protein HAT1-like isoform X2
SwissprotP466001e-178HAT1_ARATH; Homeobox-leucine zipper protein HAT1
TrEMBLA0A398AAP60.0A0A398AAP6_BRACM; Uncharacterized protein
STRINGBra012663.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15632690
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17460.11e-141Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  3. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]
  4. Tan W, et al.
    Transcription factor HAT1 is a substrate of SnRK2.3 kinase and negatively regulates ABA synthesis and signaling in Arabidopsis responding to drought.
    PLoS Genet., 2018. 14(4): p. e1007336
    [PMID:29659577]