PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009136368.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | B3 | ||||||||
Protein Properties | Length: 130aa MW: 15149.2 Da PI: 6.7443 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 39.8 | 7.9e-13 | 10 | 103 | 4 | 98 |
E-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 4 vltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 vlt d +++g+l+lp + +e++ + ++++ ++ + d + +s+ v+l +k++ +y++++GWk+F ++ +Lk+gD++ ++ + +++++ XP_009136368.1 10 VLTDTDLSTQGWLILPTQKIENIeknlgfTL-PRNGAQVEILD-NDKSYWVNL--NKNKAGYYIGEGWKKFRDERDLKTGDVIQLY--W-KDTKF 97 678899999***********88887787533.34666788888.557777***..*******************************..4.34444 PP EEEEE- CS B3 93 vvkvfr 98 ++++ XP_009136368.1 98 IFSMCP 103 777765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.5E-15 | 5 | 108 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.33E-15 | 6 | 96 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 9.827 | 7 | 105 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.2E-12 | 7 | 105 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.73E-13 | 8 | 103 | No hit | No description |
Pfam | PF02362 | 5.0E-11 | 10 | 103 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 130 aa Download sequence Send to blast |
MDPDMMTKRV LTDTDLSTQG WLILPTQKIE NIEKNLGFTL PRNGAQVEIL DNDKSYWVNL 60 NKNKAGYYIG EGWKKFRDER DLKTGDVIQL YWKDTKFIFS MCPTEASQKG ESSSSIDQWE 120 NNKSYIKINK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009136368.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009136368.1 | 3e-92 | PREDICTED: B3 domain-containing protein At1g08985 | ||||
Swissprot | Q8GWU1 | 6e-39 | Y1898_ARATH; B3 domain-containing protein At1g08985 | ||||
TrEMBL | A0A398A5R0 | 2e-79 | A0A398A5R0_BRACM; Uncharacterized protein | ||||
STRING | Bo3g092070.1 | 6e-76 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14170 | 12 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08985.1 | 3e-41 | B3 family protein |