PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009135275.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

G2-like

Protein Properties

Length: 432aa MW: 48349.8 Da PI: 5.6359

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009135275.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	99.5	2.3e-31	234	288	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rWtpeLHe+F++ v++L G+ekAtPk++l+lm+v+gLt++hvkSHLQkYRl XP_009135275.1 234 KPRMRWTPELHESFLKSVDKLEGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRL 288 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.961	231	291	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.4E-29	232	289	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.34E-16	233	289	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.5E-24	234	289	IPR006447	Myb domain, plants
Pfam	PF00249	6.1E-8	236	287	IPR001005	SANT/Myb domain
Pfam	PF14379	2.5E-22	324	371	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 432 aa Download sequence Send to blast
MNRHRLVSTA QDECNKGLGQ ACSSSLSPVH NFLNLQPENR NSPFIRSHSP DSPWPKNSPQ 60 GTFSRSSTFC TNLYISSSST SESQKHLGNT LPFLPDPSTN SQPPSAVESA RSPSIFSEDM 120 SNPFDGDNTL VKDFFNLSGD ACSDGAFHDL DCSNDSYCLS DQMELQFLSD ELELAITDRS 180 ETPRLDEIYE TPLASSSNPV TGLSQTQRSL SGGMSIEVVL SHPSPGSAAA SNHKPRMRWT 240 PELHESFLKS VDKLEGPEKA TPKAVLKLMN VEGLTIYHVK SHLQKYRLAK HIPEKKEEKR 300 NVNTEEKKLA LSNNEAAERK KGAMQLTEAL RMQMEVQKQL HEQLEVQRVL QLRIEEHAKY 360 LEKMLEEQRK TGMLMSSSSS QTSDCQNMSK TEVSSLSQPK NIASETEDDK CESPQKRRKV 420 ENNTESEDPE ER

Sequence ? help Back to Top

Protein Sequence Length: 432 aa Download sequence Send to blast

MNRHRLVSTA QDECNKGLGQ ACSSSLSPVH NFLNLQPENR NSPFIRSHSP DSPWPKNSPQ  60
GTFSRSSTFC TNLYISSSST SESQKHLGNT LPFLPDPSTN SQPPSAVESA RSPSIFSEDM  120
SNPFDGDNTL VKDFFNLSGD ACSDGAFHDL DCSNDSYCLS DQMELQFLSD ELELAITDRS  180
ETPRLDEIYE TPLASSSNPV TGLSQTQRSL SGGMSIEVVL SHPSPGSAAA SNHKPRMRWT  240
PELHESFLKS VDKLEGPEKA TPKAVLKLMN VEGLTIYHVK SHLQKYRLAK HIPEKKEEKR  300
NVNTEEKKLA LSNNEAAERK KGAMQLTEAL RMQMEVQKQL HEQLEVQRVL QLRIEEHAKY  360
LEKMLEEQRK TGMLMSSSSS QTSDCQNMSK TEVSSLSQPK NIASETEDDK CESPQKRRKV  420
ENNTESEDPE ER

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-23	234	291	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-23	234	291	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-23	234	291	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-23	234	291	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-23	234	291	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-23	234	291	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-23	234	291	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-23	234	291	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00354	DAP	Transfer from AT3G13040	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009135275.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009135275.1	0.0	PREDICTED: myb family transcription factor PHL6-like isoform X1
Refseq	XP_018513440.1	0.0	PREDICTED: myb family transcription factor PHL6-like isoform X1
Swissprot	Q949U2	0.0	PHL6_ARATH; Myb family transcription factor PHL6
TrEMBL	A0A398A787	0.0	A0A398A787_BRACM; Uncharacterized protein
STRING	Bo3g065290.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6786	27	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13040.2	0.0	G2-like family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nguyen HT, et al. A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2. Plant Cell Physiol., 2016. 57(4): p. 784-97 [PMID:26872838]