PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009129336.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB | ||||||||
Protein Properties | Length: 295aa MW: 34457 Da PI: 9.5053 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.8 | 6.8e-15 | 59 | 105 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W Ed +l ++v+++G+ +W+ Ia++m+ +Rt+k+c++rw++ XP_009129336.1 59 RGHWRISEDSQLMELVALYGPQNWNHIAEKMQGRRTGKSCRLRWFNQ 105 789999**************************9***********996 PP | |||||||
2 | Myb_DNA-binding | 49.9 | 7.4e-16 | 113 | 156 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++ eE+e+l+ a++ +G++ W+ Ia+ ++ gRt++ +k++w+ + XP_009129336.1 113 REFSVEEEERLLAAHRAFGNK-WAMIAKLFN-GRTDNALKNHWHVL 156 5799*****************.*********.***********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.306 | 54 | 106 | IPR017930 | Myb domain |
SMART | SM00717 | 1.1E-10 | 58 | 108 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-14 | 59 | 105 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 7.42E-26 | 59 | 153 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.7E-22 | 60 | 113 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.89E-9 | 62 | 104 | No hit | No description |
PROSITE profile | PS51294 | 24.982 | 107 | 161 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-13 | 111 | 159 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.9E-12 | 113 | 156 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.06E-9 | 114 | 157 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.4E-20 | 114 | 161 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MDVSCFHEYP FDLHCREAFN GFGENNAVEL SNKRSMLKES DEFKKKKKKQ RGSSRFCSRG 60 HWRISEDSQL MELVALYGPQ NWNHIAEKMQ GRRTGKSCRL RWFNQLDPRI NKREFSVEEE 120 ERLLAAHRAF GNKWAMIAKL FNGRTDNALK NHWHVLMARK LRQQSTSYLR RFNESSYNPT 180 SDHKTFTLPP DDGEDMNLVK KSWKTLKEEY TTNLKAQYLQ EEYCSLRMPM QGPHHHCSTF 240 PADSLALTLH VSIQEPSLSS SSCAEHRVVA RYFETTKPPA FIDFLGVGHH QSPKI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 8e-28 | 59 | 161 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009129336.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009129336.1 | 0.0 | PREDICTED: myb-related protein MYBAS1 | ||||
TrEMBL | A0A398AF26 | 0.0 | A0A398AF26_BRACM; Uncharacterized protein | ||||
STRING | Bra033078.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6300 | 18 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G29020.2 | 1e-148 | myb domain protein 110 |